Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq555 181 1e-40 seq578 122 8e-23 seq650 98.7 9e-16 >seq555 Length=342432 Score = 181 bits (200), Expect = 1e-40 Identities = 932/1452 (64%), Gaps = 47/1452 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || || | |||||||| | || | ||| || ||| |||| Sbjct 64773 TTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAGATGTTGGAAGTGTAGGGC 64714 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||| ||| ||| ||||| || ||||||||| |||| | Sbjct 64713 TCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAAC 64654 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | ||| || || || |||||||| ||||| |||| |||| | |||| ||||| Sbjct 64653 AAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGAGCGAAGCCCAGTCCCAG 64594 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 || || || || | || |||||||||||||||| | |||| | ||||| Sbjct 64593 AGGTCGGAG--GGAGTGACACCCCACATGTCGTACTGAAGTTCTCCCTGGGAAGCGGGCG 64536 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCA-ACTCGCCTCCAGA 145354 ||||| | | ||| |||| | || | |||||| ||| ||| ||| Sbjct 64535 AACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGATCG-CTCGAGA 64477 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 ||| || || || |||||| || ||| ||| | | ||| ||| | |||| Sbjct 64476 GCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCG 64417 Query 145415 TACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | ||||| | || | | || ||||||||||| ||||| | || | |||||||| Sbjct 64416 -AAGGCATACCCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGG 64358 Query 145474 CCGATGTTTCATGTT-GCTC----ATCCTCGCCGACTCGATAGGATA-TCGATTACGGTC 145527 || || |||||| | || | | || | || | || ||| | ||| ||| Sbjct 64357 ACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTA--ATAGTTGAT----GTC 64304 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAATGTGCCGCA-ACTTTTCAAAG 145585 ||| || || |||||||| | ||| | | || | | | ||| || || ||| Sbjct 64303 GATGATCTTGTTCAAGTTCTTGCA-GATGGCTTTGGCGACCTCATGCAGACGCTT-AAAA 64246 Query 145586 TCAAACCGAGCCTCGT--CAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTAC 145643 || | || | | || || | | | || | || |||||| || ||||| || | Sbjct 64245 TCGTA--GACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCAAGTTGC 64188 Query 145644 AAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATT 145703 | || || ||| |||| | | ||| | | ||| |||| ||| | ||| || | Sbjct 64187 AGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACT 64128 Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATG 145762 ||||||| || || || | ||| || || | ||| ||| |||||||||||||| ||| Sbjct 64127 TGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATG 64069 Query 145763 TACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCAC 145820 | || || ||||| ||| | ||| | ||| || || || | ||| || Sbjct 64068 AAAGGATTACCGGTCTCGGTCTGAGACTCGAGGAT--GGCGTACCAGAGCTTCTGGGCCT 64011 Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 || ||| |||| ||||| | ||||| | |||||| ||||||| || Sbjct 64010 TGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGT 63951 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 ||||||||| |||| |||||||| |||| |||||| ||||| |||||||| |||| | Sbjct 63950 CACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACCAATCGCCAT 63891 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000 | | ||| | || ||| || | ||| || ||||| || ||||| | | || || | Sbjct 63890 TCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGG 63831 Query 146001 CTTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGC 146058 | ||||| ||| ||| | || ||| | || | ||| | ||| |||| Sbjct 63830 CACGAACTTCCTCCTTACCGTGGTTCTTGC-GCAAGTCGAGGA-ACTCAAAGACATCCGA 63773 Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCAC 146115 |||||| || ||||| |||| || | ||| || || ||| ||||| ||||| || Sbjct 63772 GTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGAC 63713 Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTT 146175 || ||| | ||||||| ||||| || | ||||||| ||| ||| || || ||||| Sbjct 63712 GTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTT 63653 Query 146176 CGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC 146235 ||| | || | |||| || | |||||| | || | |||| ||| || Sbjct 63652 GGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGACCGATACCACC 63593 Query 146236 GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT---GCT 146292 | || |||||| || ||| ||| ||| || |||||||| ||||| || | Sbjct 63592 GGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTC 63533 Query 146293 ATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGA 146352 ||| |||| ||| || || || ||||| | | ||| | || || || || Sbjct 63532 ATC-CTTC--ATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTT 63476 Query 146353 GAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGAT 146412 ||| | ||| || || || ||||| ||| | ||| | ||||| || || Sbjct 63475 GAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAAT 63416 Query 146413 AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 ||| | |||||| | ||| ||||| || | ||| || ||||||| |||||| ||||| Sbjct 63415 AGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCATGTGCTGGGG 63356 Query 146473 CCGCTCCGCCAC 146484 ||||| || || Sbjct 63355 ACGCTCAGCGAC 63344 >seq578 Length=360407 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| ||||| || |||||||||||||| Sbjct 207309 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAG 207250 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 207249 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 207190 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 207189 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 207130 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || || || |||||||| Sbjct 207129 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||||||||||| || |||||||| ||| Sbjct 207537 CCGCCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 207478 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||||||||| || || || Sbjct 207477 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 207418 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||||| Sbjct 207417 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACC 207358 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || || || |||||||| Sbjct 207357 TCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 >seq650 Length=146785 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 130907 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 130966 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| || ||| Sbjct 130967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 131026 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 131027 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 131086 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||| | ||| ||||| ||| Sbjct 131087 TCAAGGGTGATGGTCTTACCTGTT 131110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008593185920