Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq555 141 1e-28 seq580 111 2e-19 >seq555 Length=342432 Score = 141 bits (156), Expect = 1e-28 Identities = 451/699 (65%), Gaps = 8/699 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | |||||| || || | | || || | ||| Sbjct 63933 AGGCCGGGGCACTCGTTGGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTC 63874 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || | ||||||||| || || || | || | | |||||| || Sbjct 63873 ATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTA 63814 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| | ||||||||| | | | ||| || ||||| || || | ||| Sbjct 63813 CCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAG 63754 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | ||||| || ||||| || || || || | ||| | ||| ||||| || Sbjct 63753 ATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTG 63694 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || | ||||| ||| ||| ||||| || | || || Sbjct 63693 AAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAG 63634 Query 63320 CCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||||| ||| ||| ||||| || || || || | || ||||| Sbjct 63633 CCGGTACCACGAATGC----AATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT 63578 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | || || ||||| || || || |||||| ||||| | | Sbjct 63577 CATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGAC 63518 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || ||||| || | || | | || || || || || | || || || || Sbjct 63517 AAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGC 63458 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 |||||||| | |||| || | || ||||||||||||||||| || || ||| Sbjct 63457 ATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTG 63398 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 ||||| || || || |||||||| | ||||||||| || | ||| ||| |||| Sbjct 63397 GCCGTGAATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCC 63338 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 ||| || | |||||||||| || | || || ||||| || ||||||| || Sbjct 63337 GTTGATACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAA 63278 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||| || ||||| || || |||||| ||| | ||||| Sbjct 63277 GTCGCGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 111 bits (122), Expect = 2e-19 Identities = 172/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || |||||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || || ||||| || ||||| || || || ||||| || || || ||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 32837 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| | ||||| ||||||||||| || || || || ||||| | || | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 32898 AAGAG 32902 ||||| Sbjct 40918 AAGAG 40922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626352754800