Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq578 149 5e-31 seq650 113 4e-20 >seq578 Length=360407 Score = 149 bits (164), Expect = 5e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||||||||| || || || | Sbjct 207311 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 207370 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| || ||||| Sbjct 207371 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 207430 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 207431 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 207490 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 207491 ATCCAGAAGGAGTCGAC 207507 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || |||| || || || || | Sbjct 207081 AGATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTT 207140 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || |||| || || || |||||||| || ||||| || |||| Sbjct 207141 CGGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 207200 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || ||||| ||| | |||||| ||| ||| |||| ||||||| Sbjct 207201 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACA 207260 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| ||||| |||||| | ||| | ||| | || | || || ||| Sbjct 207261 ACATTCAGAAAGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGGT 207310 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || ||||||||||| | || ||||| ||| |||| || || || || Sbjct 306389 GTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAG 306330 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || ||| | ||| | |||| || || || |||||||| || ||||| || Sbjct 306329 TCTTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCT 306270 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || ||||| || || ||| | || ||| |||||| | || || Sbjct 306269 GATCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTCGGAC 306210 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 306209 TACAACATCCAGAAGGAGTCTACC 306186 >seq650 Length=146785 Score = 113 bits (124), Expect = 4e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || |||| ||||| ||||| | |||| ||| | ||| | |||| Sbjct 131110 AACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGC 131051 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || || || |||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 131050 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 130991 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||||||| || || || |||||| Sbjct 130990 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACC 130936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724352694845