Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq550 172 1e-37 seq557 102 2e-16 >seq550 Length=300240 Score = 172 bits (190), Expect = 1e-37 Identities = 766/1196 (64%), Gaps = 49/1196 (4%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||||||||||||||| || || || ||||| || |||| || |||||||||| Sbjct 95369 CTGCACTCTCATCCTCACCGAAGGTGACTCCGCCAAGGCGCTTGCTGTGGCTGGTCTTGT 95310 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 || |||||||||||| | || ||| | ||||| || ||||||||||| ||||| || || Sbjct 95309 CGAGGTGGGTCGTGACAATTACGGTGTTTTCCCGCTTCGTGGTAAGCTTCTCAATGTCCG 95250 Query 217956 CGATGC--CTCGGTTTCA-AGCATTGCTGCAAATGCAGAGATTGCCGCCATCAAGCAAAT 218012 || || ||| ||| | ||| | | ||||| ||||| || |||||| | || Sbjct 95249 TGAAGCGACTCACGATCAGATCAT-GAAG--AATGCCGAGATCAAAGCGATCAAGGAGAT 95193 Query 218013 CCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATGCGTCATC--TCTGCGTTATGGCTCT 218070 | | ||||| ||| || ||| ||| || ||||| | | |||| || ||| | Sbjct 95192 CATCGGTCTGCAGCACGGCAAGCAGTACCTTGA--CGTCAGCAGTTTGCGATACGGCAGT 95135 Query 218071 GTCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAAC 218130 ||||| | ||||| ||| ||| || || || ||||| | ||| | || ||| Sbjct 95134 ATCATGATCATGACCGATCAGGATCACGATGGTTCGCACATCAAGGGTCTCATCATCAAC 95075 Query 218131 TTCTTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCC 218190 ||| || || | | |||| || ||| | || ||||| |||| | Sbjct 95074 TTCCTCGACCACTTCTACCCCTCGCTGCTCAAGCTTCCTAATTTCCTCGTCGAGTTCATC 95015 Query 218191 ACTCCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTT 218244 |||||||| || ||||| || | |||| || || ||| || | || || Sbjct 95014 ACTCCCATTGT-----CAAGT-GTAGCAAGGGTAAGAAGGAGCTCTCCTTCTTCACGATT 94961 Query 218245 CCTGACTATGAGAGTTGGAAGCAGAACACTGCCGACTGTGCC--AAATGGTCT----ATC 218298 || || || || ||||||| ||| ||| || | | ||| ||| ||| Sbjct 94960 CCCGAGTACATGACTTGGAAG--GAA----GCCAACAGCAACGGAAAGGGTTGGCGCATC 94907 Query 218299 AAGTATTTCAAGGGTCTCGGAACAA-GCACATCCGAAGATGCCAAGAAGTACTTCAAGAA 218357 ||||| | ||||||||||||||| | || || |||| ||||| ||||| ||| Sbjct 94906 AAGTACTACAAGGGTCTCGGAACCTCGGAC-TCGCAAGACGCCAAAAAGTATTTCCGTGC 94848 Query 218358 CCTCAAGTCGCTCGTGAAGATCTTTGGGTGGACCGAAGACTCTG---GCGAGCTCATCGA 218414 | | || | || | ||||| ||| |||| || ||||||| ||||| Sbjct 94847 TATGGACAAGCACATGTTGCCCTTTGATACCACCAAAGATGGTGATCGCGAGCTGATCGA 94788 Query 218415 CCGATCTTTCAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCC 218474 | ||||||||||| | || || || ||| ||||| | | |||| || Sbjct 94787 TCTTGCTTTCAACAAGAAGAAAGCGGACGATCGAAAGGAGTGGCTCCGTCAGTTCCGTCC 94728 Query 218475 CGGAAACCAGTTGGACCAG----TCGAAGACCAACATCCCCGTCCCTGACTTCATCGACA 218530 |||| | | | ||||| |||| ||| || ||| | | || || ||| ||| Sbjct 94727 TGGAACCTACCTCGACCACAACATCGA----CAAGATTCCCTACGCCGATTTTATCAACA 94672 Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590 |||||||||| || |||||| | || |||||| || || | || |||| Sbjct 94671 AGGAGCTCATCCTCTTCTCGATGGCCGACAACATGCGTTCGATCCCGTCTGCTGTTGATG 94612 Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAG 218650 | ||||||||| ||||| ||| | |||||| | | ||||| || || | | Sbjct 94611 GTCTCAAGCCAGGTCAGCGAAAGGTGATCTTTGGCACGTTCAACCGCAAGGGCGACGGTG 94552 Query 218651 AAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTG 218710 |||| ||||| ||||| | ||| | || || | | | | |||||| ||||||| Sbjct 94551 AAATCAAGGTTGCTCAACTCGTCGGTCACGTGTCTGGTACCACAGCCTACCACCACGGTG 94492 Query 218711 AGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 | ||| || || || |||| || || | |||||| | | |||||| || |||||| Sbjct 94491 AACAGTCGCT-CACCATGACCATCGTTGGTCTCGCACAGAATTTTGTGGGTAGCAACAAC 94433 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 | |||||||| || | ||||| || ||| ||||| | | ||||| |||||| | Sbjct 94432 GTTAACTTGCTCGAGCCAAGGGGTCAATTCGGTACTCGTTTGCTTGGTGGTAAGGATGCT 94373 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || ||||||||||| || || | || | | ||||| ||||| |||| Sbjct 94372 GCCTCGGCCAGGTATATTTTCACCGCGCTGCCAAAGATCACGCGTGCCTTGTTCCCTCAG 94313 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| |||| ||| ||| | || | || || ||||| || ||||| ||||| Sbjct 94312 AACGACGATGCGCTGCTTGAATACTTGGACGATGATGGACAGAGTATCGAGCCGCAGTGG 94253 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 || |||||| | |||| |||| | || |||||| | |||||||| || || Sbjct 94252 TACATGCCTGTTGTTCCTCAGGTGCTGCTCAACGGTGCCGAAGGTATCGGTACTGG 94197 >seq557 Length=340206 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||||||||| || || |||| | | |||||| ||| || || Sbjct 166436 GGCCCCAACGGTTCGGGTAAGTCGACTCTTGTCAAGCTTGTCGTTGGCGACACCGAGCCC 166495 Query 280239 A-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | || || | | | |||||||| |||||| || || | ||||||||| |||||||| Sbjct 166496 AACTCTGGTGAAC-TCTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCACGC 166554 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 |||||||||||| || | ||||| |||| ||| ||| | | ||||| | ||||| || Sbjct 166555 TTTCCACCACATTGACCAGCACCTCGACAAGACCCCTCTCGACTACATGCTCTGGCGTTA 166614 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||| | ||||| | || |||||||| | ||||| Sbjct 165958 TCTCTCCGGTGGTTGGAAGATGAAGGTCGCCCTTGCCCGTGCCATTCTCTTCAAGGCCGA 166017 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | || || ||||| ||||| || |||||| ||||| | ||||||| ||| | Sbjct 166018 CATTCTCCTCCTTGACGAGCCCACTAACCACTTGGACGTCGTCAACGTAAAGTGGATTAC 166077 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 |||||| || || |||| | | || |||||||||| ||||||||||| || Sbjct 166078 CGACTACCTCTGCAACCTCAAGACGGCCACCGCCATCATTGTCTCGCACGACTCTGGTTT 166137 Query 279884 CCTAGATGCCGTGTGCTCTGCCAT 279907 | | | ||| ||| ||| ||| Sbjct 166138 CTTGAACAACGTTTGCACTGACAT 166161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827410389633