Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq578 161 2e-34 seq557 132 9e-26 seq650 127 4e-24 seq541 102 2e-16 seq550 86.0 1e-11 >seq578 Length=360407 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || ||||||||||| || ||||| ||||| ||| Sbjct 207309 CCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAG 207250 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || ||| Sbjct 207249 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 207190 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| |||||||| || |||||||| | | || || Sbjct 207189 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACC 207130 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 207129 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 306157 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 306216 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || ||||| | || || || || ||| Sbjct 306217 AGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 306276 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 306277 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 306336 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| || || || |||||||| Sbjct 306337 TCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 306383 >seq557 Length=340206 Score = 132 bits (146), Expect = 9e-26 Identities = 365/554 (66%), Gaps = 13/554 (2%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 ||||| || ||||||||||| || |||||||||| | | || | ||| |||| Sbjct 166142 TCAAGAAA-CCAGAGTCGTGCGAGACAATGATGGCGGTGGCCGTCTTGAGGTTGCAGAGG 166084 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | | | ||| |||||| |||||||| |||||| || || ||||| || || Sbjct 166083 TAGTCGGTAATCCACTTTACGTTGACGACGTCCAAGTGGTTAGTGGGCTCGTCAAGGAGG 166024 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || ||||| || | | ||| ||||| || | || | | |||||| ||||| || ||| Sbjct 166023 AGAATGTCGGCCTTGAAGAGAATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCG 165964 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || || | |||| | |||| || | || ||||| |||||| ||| ||||| Sbjct 165963 GAGAGACCGGCGATGGGC---GAGTTCTGACGAGCATCGTCGAAGCCGACCTCGTGGAGC 165907 Query 225683 GTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742 |||| || ||| || || ||| | ||| | | |||| ||| | Sbjct 165906 GTCTTGACGGCCTCCTCCTTGGACATG-GAGAG---ACGCTCG--TCGGCGCAGATAAAG 165853 Query 225743 TCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGG 225802 ||| |||||||| || | || |||||| |||||| || |||||| || ||| Sbjct 165852 TCAAGGACGGTCATCTCACCTTCGGAACCGTCAAGGTCGTGCTCGACGTACCAGGTGCGG 165793 Query 225803 AGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTA 225862 | || | ||||| ||||| | ||||||||| | || ||||| | ||||| Sbjct 165792 ACCTCTTCGGGCGAAGGGAAACCCTCGACCTGGCCATTGGTGATGGCACGCATGAGGGTC 165733 Query 225863 CTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGG 225922 ||| || | ||||| ||||| || ||||| | | || ||||| | |||| Sbjct 165732 GACTTTCCGGAACCGTTACGACCGCAAAGACCGTATCGGTGGCCACGCTTAAGACGGAGG 165673 Query 225923 CGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGG 225982 | || ||| ||||| |||||| |||| ||||| || ||||||| || | ||| ||| Sbjct 165672 GTGGCGGTGTTGAGGAGAATCTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAAAGG 165613 Query 225983 TCCTCACCCTCCTC 225996 || ||||||||||| Sbjct 165612 TCTTCACCCTCCTC 165599 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 ||||| | |||||||| ||||| | |||||| || ||||| || |||| ||| | |||| Sbjct 167109 AGCGCAGCGAGCGACTCACGGTCCAAGAAGTTGGTGGGCTCGTCGAGGACGATGATGTGG 167050 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | |||| ||| ||||||| || | ||| ||||||||||| |||||||| ||| Sbjct 167049 GGTCGTCGCCAGGTGGCGGCACCAAGAACGACCTTGACCTTCTGACCACCAGAGAGACCG 166990 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657 || || ||| | ||||| ||| | || ||||||| Sbjct 166989 CGCATGGTGTTGTGTGAGGTGAACTCGCGCTCGAGACCAA 166950 >seq650 Length=146785 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || || ||| Sbjct 130907 CCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 130966 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || |||||||| || Sbjct 130967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGG 131026 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 131027 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 131086 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 131087 TCAAGGGTGATGGTCTTACCTGT 131109 >seq541 Length=244228 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || ||||| || || ||||||||||||||||| ||||||||| |||||||| || Sbjct 180486 TCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTATCGAAA 180545 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 180546 GACTCCACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACGAAGATCTGCAT 180601 >seq550 Length=300240 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177072 AGACCGAGAATTTGTTTGATGGCAGTAATCTCGGCGTTGTTAGTAATACTAGACACAGAC 177131 ||||||| || | ||||| || | |||||||| || || | || | || | Sbjct 95184 AGACCGATGATCTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTC 95243 Query 177132 GCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCGACCC 177191 || ||||||||||| || ||||||||||| || ||||||| ||||| || |||||| Sbjct 95244 GCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCC 95303 Query 177192 ACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAATGAGC 177251 || | |||| ||||| ||||||| ||| |||||||| || || | ||||| Sbjct 95304 ACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGA 95363 Query 177252 GTGCA 177256 ||||| Sbjct 95364 GTGCA 95368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614186040360