Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq555 374 2e-98 seq580 279 1e-69 seq546 105 1e-17 >seq555 Length=342432 Score = 374 bits (414), Expect = 2e-98 Identities = 1034/1578 (66%), Gaps = 53/1578 (3%) Strand=Plus/Minus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| ||||| |||| | ||| | | || || ||||||||| ||||| | || Sbjct 64986 TTGAGCGACTGCGACTGGCAAATGAAAGCACCTCGATCGGCGGCCATGTCGATGATGGCC 64927 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 ||||| || ||||| | | |||||||||| ||||| | ||||||| || | Sbjct 64926 TTCTGCGAGATCTCCCAGACAGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGG 64867 Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 | ||| || | ||||| ||| |||||| || | ||| | |||||||| || Sbjct 64866 ACGTTTTGGATGGAGCCACCGTGAGCGATGATTCGGTTCTTCATTGTGTCGTTCCAAAGT 64807 Query 244058 CCCAAGCGCTCCAGCGCCTCG-------ACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 ||| | || | | |||| |||||| | || || ||||| || || || Sbjct 64806 CCCT---GTTCGACCAACTCGCGGAGCAACCAGGGG----TTGACGACCTGGAATTCACC 64754 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || || || ||||| |||| || ||||||| || ||| || ||| Sbjct 64753 AGCAAGTACACGACGAGAGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCC 64694 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || ||||| || ||||| |||||||| | || || || ||| | | || Sbjct 64693 CAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACC 64634 Query 244231 GTGCCTCTGGATGCGGAGTCT-GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 |||| | |||| || || |||| ||||||||| |||||| | Sbjct 64633 GTGCTTGGCGATGTT-AGCCTTGAGCGAAGCCCAGTCCCA---------GAGGTCGGAGG 64584 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 | ||| ||||||||||| |||| || |||| | |||| || | ||| | Sbjct 64583 GAGTGACACCCCACATGTCGTACTGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATG 64524 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAG 244408 || ||||| |||| ||| |||| || || | ||| ||||| ||||||| |||| Sbjct 64523 TCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCA-CGATCGCTCGAGAGCGGCGTGGTAG 64465 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 ||||||||||||||| | ||||| || |||| | | ||||| ||| Sbjct 64464 ATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCGAAGGCATACCCC 64405 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 || |||||||| | ||||| || ||||| || ||||| |||||||| | ||| ||| || Sbjct 64404 ATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGTGACGCATG 64345 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 ||||| || ||||| ||||||||| ||||| |||||| | |||||| | ||| Sbjct 64344 TTGGATCGACGAGCTTCTTCAACGGGGTAATAGTTGATGTCGATGATCTTGTTCAAGTTC 64285 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 | ||| | |||| || ||| ||| ||| ||||| | | || | | | Sbjct 64284 TTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTAAAATCGTAGACCTTGGTAACAGGG 64225 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 ||||| | | | |||||||| | ||||| ||||||||| || ||| Sbjct 64224 TCGATGAAGGT------------GGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACC 64177 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | | | ||||| || || |||||||||||||| |||||||||||| || Sbjct 64176 TCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCG 64117 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 |||| || || ||||||||| ||| |||| ||||||||||||| ||||| || || Sbjct 64116 AGGTTCTTCTGGTTGGACTTGCGGTTAGCAG-CGTCCTTGTAGAGGATGAAAGGATTACC 64058 Query 244828 GGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT--CCTG 244885 ||||||| ||| | |||||| | || |||||| | | |||||||| || || Sbjct 64057 GGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTT 63998 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 ||| | ||||| ||||||||||| ||| || ||| |||||| || || Sbjct 63997 ACAGCGT--CCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCAAACTCGTCACCGTAGCAG 63940 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 ||| | |||||||||||| ||||||||||| ||| ||||| | || |||| Sbjct 63939 TCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACCAATCGCCATTCTGCTCGACC 63880 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| ||||||| ||| || || | |||||| || | || | || Sbjct 63879 CTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC 63820 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| || |||||| | || || | || |||||||| || |||||| ||||| Sbjct 63819 TCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCA 63760 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 ||||||| ||| | ||| || || |||||||| || || ||||| | | | ||||| Sbjct 63759 ATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGA----CGTAACGAGC 63704 Query 245186 ----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 |||||||| || || | ||||| || ||||| | |||||||| || Sbjct 63703 AGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGC 63644 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| | ||| | || | | | |||| | || | || |||||| ||| Sbjct 63643 AATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGACCGATACCACCGGCGGTCTT 63584 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | ||| ||| |||||| |||||| || || || || ||| |||||| Sbjct 63583 GGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCAT 63524 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | ||| || || || || || ||||| || | |||| | | | |||||| || || || Sbjct 63523 GGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGG 63464 Query 245422 GCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| Sbjct 63463 CGAGGCATGAGTAAAGTA 63446 >seq580 Length=301176 Score = 279 bits (308), Expect = 1e-69 Identities = 484/694 (70%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||| || ||||| Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||||| || || || ||||| ||| || Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 41115 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || |||||||||||||| |||||||| || ||||| || ||||| | | | Sbjct 41114 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCGC 41055 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| | ||||| || ||||||||||| |||||||| || Sbjct 41054 TTCAGTTCCGAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATGATG 40995 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| || ||| | || || |||| ||||||| || |||| Sbjct 40994 GAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGAG 40935 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || || | ||| | ||||| || ||| | ||||||||||||| || Sbjct 40934 CAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGAAGAAGGCCGAA 40875 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||| | | | | || || |||| ||| | || || |||||| Sbjct 40874 TGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCCTTT 40815 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||||||||| || ||||||||||| ||| |||| ||||| ||||||||||||||| || Sbjct 40814 GCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAGAAG 40755 Query 42777 AA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || |||||||| ||||||||||| ||||| |||||| | |||||||| || Sbjct 40754 CGCGGTCTC-ATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCT 40696 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA--- 42892 || | || |||||||||||||| ||| |||||||||| | |||| | || | Sbjct 40695 TCACACCGATTTTGCCTGCCTCCTCTTC---AGCCACCTCA---AGAAGCGCGCGCACCC 40642 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 || |||| ||||| | ||||| || || ||||||| |||||| | || || Sbjct 40641 CGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTGACCCA 40582 Query 42953 GTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCA 42985 || | || ||| | || ||||||||||||| Sbjct 40581 ATCAATTCCTTGTG-CAATGATCGGCATGAACCA 40549 >seq546 Length=284479 Score = 105 bits (116), Expect = 1e-17 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 242949 TTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACC-TGCTCAACAAGAG 243007 ||||| || ||||||||| | || || |||||||||||||| |||| ||| ||| | || Sbjct 215486 TTCCCTGAAAGGACCACTGCTATTGGTCAGATGATCAACTCCTACCTTGCCCAA-ACAAG 215544 Query 243008 CGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 |||||| |||||||| | | | |||||||| ||||| |||||||| |||||| Sbjct 215545 CGATCTTGACGATCAGGCCATTCACCTCCTCTTCTCCGCCAACCGTTGGGAA 215596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330783576880