Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq624 105 6e-18 >seq624 Length=65696 Score = 105 bits (116), Expect = 6e-18 Identities = 261/388 (67%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 20363 AATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCA 20421 || || || |||| ||| || || || || ||||| | | |||| || |||||||| Sbjct 40085 AACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAG-CAAGATCTTTGGGGTTCCA 40143 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACG 20480 |||| | | ||| || | |||| || || || || || || | | | ||| Sbjct 40144 TGCACTGAGCAAGATCCTGCGATCGGTGGGGTTGTTCTTGATCTTGTCAATGACTTCACG 40203 Query 20481 ACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAA 20540 ||||||||||| || || || || ||||| | || |||| ||| | || |||| Sbjct 40204 -CAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAGTCCTTGTATTCTGCGCCAA 40262 Query 20541 AGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGC 20600 |||| | ||| ||||| ||||| || || |||||||| || || | | ||| || | Sbjct 40263 AGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACCTTCTCGCCGGTGTTGCAAGT 40322 Query 20601 CGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCT 20658 | ||| | | |||||||| | || || || |||||| || | || || ||| Sbjct 40323 CACGCGAGTCGAGGAACTCTCGTGATCCGTTACCGTCCCAGATGTGCACGCCCTTGTCAG 40382 Query 20659 TGA-AAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGC 20717 | | ||||| ||||||| || | || || |||||| || ||||| | || ||||| Sbjct 40383 TAAGAAGCT---TGGAGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCCTCCAGTACGC 40439 Query 20718 CTCGCCAAAACACCCGCTTTGTGGTTAG 20745 ||||| | || || ||||||||||| || Sbjct 40440 CTCGCAAGAAGACACGCTTTGTGGTGAG 40467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441368866264920