Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq578 116 9e-21 seq550 87.8 4e-12 seq541 87.8 4e-12 >seq578 Length=360407 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| || || || ||||| || ||||| | Sbjct 306157 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 306216 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| |||||||| ||| | || Sbjct 306217 AGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 306276 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || || ||||| || || | || || || || Sbjct 306277 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 306336 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || || || || || |||||||| Sbjct 306337 TCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 306383 >seq550 Length=300240 Score = 87.8 bits (96), Expect = 4e-12 Identities = 465/732 (64%), Gaps = 18/732 (2%) Strand=Plus/Plus Query 325042 GATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATAT 325101 ||| | ||| |||| || ||||||||| ||||| ||||| |||||| |||| || Sbjct 94076 GATGTCACCGGTGAAGCCACGGTACCACGGCTTCATGGGGACGACGTCCTCACCAGCCAT 94135 Query 325102 CAAACGCTTCACATTATCTACGATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCA 325161 || || || | || ||||| | |||||||| |||| | | || ||||| Sbjct 94136 GCGTCGTCGCAAGTTGGCAACAATGTCATGCGGGTTGTAGTTGGGCACGAAGGTAGACCA 94195 Query 325162 TCCGGTTCCGATACCACTCGATCCATTCACCAGGATACTCGGAATAACAGGCACATAATA 325221 ||| || |||||||| | || || | ||| | |||| |||||||| || | Sbjct 94196 TCCAGTACCGATACCTTCGGCACCGTTGAGCAGCACCTGAGGAACAACAGGCATGTACCA 94255 Query 325222 CTCTGGTTCGATCTTATCGCCGTCGTCGTACATATATTTCAGAAG---ATTGTCGTCCGT 325278 || || ||||| | | || || |||| || |||| || || || ||||| | Sbjct 94256 CTGCGGCTCGATACTCTGTCCATCATCGTCCAAGTATTCAAGCAGCGCATCGTCGTTCTG 94315 Query 325279 ATCGACGAAAACCTGTCGAG-TCTGAGGGTTCAGTTTCatatatatatatCGTGCACTCG 325337 | || || | | || | ||| || ||| | | ||||| | || | Sbjct 94316 AGGGAACAAGGCACG-CGTGATCTTTGG---CAGCGCGGTGAAAATATACCTGGCCGAGG 94371 Query 325338 CGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA 325397 | |||||||||||| |||| | | |||||| || ||| ||| | | |||| | Sbjct 94372 CAGCATCCTTACCACCAAGCAAACGAGTACCGAATTGACCCCTTGGCTCGAGCAAGTTAA 94431 Query 325398 TGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTT 325457 ||| ||||| || ||| ||| |||||| || ||||||||| || || || Sbjct 94432 CGTTGTTGCTACCCACAAAATTCTGTGCGAGACCAACGATGGTCATGGTGAGCGACTGTT 94491 Query 325458 CGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCTTCAC 325515 | || ||||| ||| ||| || | | | |||| |||| || || |||||||| | Sbjct 94492 CACCGTGGTGGTAG--GCTGTGGTACCAGACACGTGACCGACGAGTTGAGCAACCTTGAT 94549 Query 325516 GT--CGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTG 325573 | | |||| | ||||| ||||| | | | ||||| || || ||| || ||| Sbjct 94550 TTCACCGTCGCC--CTTGCGGTTGAACGTGCCAAAGATCACCTTTCGCTGACCTGGCTTG 94607 Query 325574 AAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGT 325633 | ||||||||| | ||||| || || ||| | |||||| | || || Sbjct 94608 AGACCATCAACAGCAGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGATGAGC 94667 Query 325634 TCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCT 325693 ||||||| ||| || |||| ||||| || | | |||||||| || | |||| Sbjct 94668 TCCTTGTTGATAAAATCGGCGTAGGGAATCTTGTCGATGTTGTGGTCGAGGTAGGTTCCA 94727 Query 325694 GGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAGAACG 325752 || | | || || | ||||||||| ||||| || ||| ||||||||||| | | Sbjct 94728 GGACGGAACTGACG-GAGCCACTCCTTTCGATCGTCCGCTTTCTTCTTGTTGAAAGCAAG 94786 Query 325753 GTCAATGAGCTC 325764 || || ||||| Sbjct 94787 ATCGATCAGCTC 94798 >seq541 Length=244228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| || || || || || || || || || ||||| || || | |||| || || Sbjct 180491 TGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTATCGAAAGACTC 180550 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || ||||||||||||||||| |||||||| Sbjct 180551 CACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACGAAGATCTGCAT 180601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179643623488414