Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq550 114 3e-20 >seq550 Length=300240 Score = 114 bits (126), Expect = 3e-20 Identities = 473/736 (64%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 297157 TTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTCC 297216 ||| ||||| | ||| |||| || || |||||||| ||||| ||||| || || || Sbjct 94070 TTCCTCGATGTCACCGGTGAAGCCACGGTACCACGGCTTCATGGGGACGACGTCCTCACC 94129 Query 297217 AGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGT 297276 ||| || ||| || |||| | || ||||| | || ||||| | || | || Sbjct 94130 AGCCATGCGTCGTCGCAAGTTGGCAACAATGTCATGCGGGTTGTAGTTGGGCACGAAGGT 94189 Query 297277 CGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCAC 297336 ||||| || |||||||| || | ||| || | ||| | |||| |||||||| Sbjct 94190 AGACCATCCAGTACCGATACCTTCGGCACCGTTGAGCAGCACCTGAGGAACAACAGGCAT 94249 Query 297337 ATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTC 297396 || ||| || ||||| | | || ||||| | || |||| || || |||||| Sbjct 94250 GTACCACTGCGGCTCGATACTCTGTCCATCATCGTCCAAGTATTCAAGCAGCGCATCGTC 94309 Query 297397 CGTATCGACGAAAACCTGTCGAGTCTGAGGGTT--CAGTTTTGTGAAAATATATCGTGCA 297454 | | || | || | | | | ||| || ||| ||||||||||| | || Sbjct 94310 GTTCT-GAGGGAA-CAAGGCACGCGTGATCTTTGGCAGCGCGGTGAAAATATACCTGGCC 94367 Query 297455 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 297514 || |||||||||||| |||| | | |||||| || ||| ||| | | || Sbjct 94368 GAGGCAGCATCCTTACCACCAAGCAAACGAGTACCGAATTGACCCCTTGGCTCGAGCAAG 94427 Query 297515 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGAT 297574 || | ||| ||||| || ||| ||| |||||| || ||||||||| || || Sbjct 94428 TTAACGTTGTTGCTACCCACAAAATTCTGTGCGAGACCAACGATGGTCATGGTGAGCGAC 94487 Query 297575 GCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCT 297632 ||| || ||||| ||| ||| || | | | |||| |||| || || ||||||| Sbjct 94488 TGTTCACCGTGGTGGTAG--GCTGTGGTACCAGACACGTGACCGACGAGTTGAGCAACCT 94545 Query 297633 TCACGT--CGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 297690 | | | | |||| | ||||| ||||| | | | ||||| || || ||| || Sbjct 94546 TGATTTCACCGTCGCC--CTTGCGGTTGAACGTGCCAAAGATCACCTTTCGCTGACCTGG 94603 Query 297691 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAAT 297750 |||| ||||||||| | ||||| || || ||| | |||||| | || Sbjct 94604 CTTGAGACCATCAACAGCAGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGGAT 94663 Query 297751 AAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATT 297810 || ||||||| ||| || |||| ||||| || | | |||||||| || | | Sbjct 94664 GAGCTCCTTGTTGATAAAATCGGCGTAGGGAATCTTGTCGATGTTGTGGTCGAGGTAGGT 94723 Query 297811 TCCTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAAG 297869 ||| || | | || || | ||||||||| ||||| || ||| ||||||||||| Sbjct 94724 TCCAGGACGGAACTGACG-GAGCCACTCCTTTCGATCGTCCGCTTTCTTCTTGTTGAAAG 94782 Query 297870 AACGGTCAATGAGCTC 297885 | | || || ||||| Sbjct 94783 CAAGATCGATCAGCTC 94798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102869924846550