Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq555 223 4e-53 seq550 136 5e-27 seq580 129 7e-25 >seq555 Length=342432 Score = 223 bits (246), Expect = 4e-53 Identities = 1113/1748 (64%), Gaps = 51/1748 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| | ||||||||||| |||| ||||||| | || | |||||||| | Sbjct 65079 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAAGTG 65020 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || || || ||| || | || || | || || || ||||| Sbjct 65019 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 64960 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 || ||||| || ||||| || || | ||||| | ||| ||||| ||||| || Sbjct 64959 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 64900 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 ||||| ||||| ||| || |||||| | || ||||||||||||||||| || Sbjct 64899 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCG----TG 64844 Query 113837 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889 | | |||| | | |||||| || || ||| || || || || || ||| Sbjct 64843 AGCGATGATTCGGTTCTTCATTGTGTCGTT---CCAAAGTCC---CTGTTCGACCAACTC 64790 Query 113890 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 113945 ||| | ||||| || || ||||| || || || | ||| |||| Sbjct 64789 GCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAGA 64731 Query 113946 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTG 114005 | |||| ||||| ||||| |||||||| ||| |||||||| || ||| || || | Sbjct 64730 TGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 64671 Query 114006 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 114065 ||||||||||||||| | ||| |||||| ||||| | | ||| |||||| Sbjct 64670 TGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGA 64611 Query 114066 GGGCGTCCCAGTCGTAG---TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 | | ||||||| || | | || | ||| ||||| || |||| || Sbjct 64610 GCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACACCC---CACATGTCGTACTGAAGTT 64554 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT 114182 || ||||| || ||||| || | |||||||||| | ||| | ||| ||||| | Sbjct 64553 CTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACT 64494 Query 114183 CGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 || | | |||| ||||| || ||||| || || ||||| || || | | |||| Sbjct 64493 CGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGA 64435 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTG 114300 ||||| ||| || || || | | || | || ||| |||| |||||||| || Sbjct 64434 CGCGCCTCAGGGGACTCGAAGGC-ATACCCCATGATCATGAATGCATCGGCGAGACCCTG 64376 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATA 114360 ||||||| || || || || || | ||| || || ||||| || ||||| || Sbjct 64375 AACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTA 64316 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | | || | ||||| | | | || | || ||| || | || | || ||||| || Sbjct 64315 ATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAG 64256 Query 114421 CTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 114479 | |||| | || | || | | || | | || |||||||| || | Sbjct 64255 ACGCTTAAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGG 64197 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 ||| || || |||| | |||||| ||| |||||| || ||||| || || | | Sbjct 64196 CCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGT 64137 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 114599 | || | ||| ||||| || | |||||| || || ||||| |||| || ||||||| Sbjct 64136 TGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGT 64077 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCG 114658 | || ||| | || | || ||||| || || |||| ||| || || | ||||| | || Sbjct 64076 AGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCT 64017 Query 114659 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCA 114718 | | || | || || || || ||||| ||||||| |||||| ||| Sbjct 64016 GGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTCA 63958 Query 114719 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 114778 ||||| ||||| | || | || || || || | ||||| | ||| ||||| Sbjct 63957 AACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACCAA 63898 Query 114779 TGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGA 114838 | ||| || ||| || | |||||||||||| || |||| ||| ||||| ||||||| Sbjct 63897 TCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGC 63838 Query 114839 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 114898 || || ||| |||| || | || || || ||||| || | || || | || | Sbjct 63837 TCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACA 63778 Query 114899 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCC 114952 |||| |||||| || || | ||| | || | | || | |||| |||| | Sbjct 63777 TCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTACCACCT 63721 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAG 115010 |||| || || | || ||| || || || || ||||| || | |||||| | | | Sbjct 63720 TGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 63661 Query 115011 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATAC 115070 | || || || || ||| ||| | | | | |||||||| | || Sbjct 63660 A--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGAC 63603 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGT 115130 | ||||| || || ||| ||||| || || | |||| || |||||||||||| Sbjct 63602 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGT 63543 Query 115131 CGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 115190 ||||||||||| |||| | | || |||||| || ||| | || || || |||| Sbjct 63542 CGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTAC 63483 Query 115191 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAG 115249 | ||||||||||| ||||| | || | || || ||| ||| ||||| | ||| Sbjct 63482 CGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAC 63424 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | | |||||| | ||||||||||||| | || ||||| | |||| Sbjct 63423 GTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCATG 63364 Query 115310 TATTGGGG 115317 | ||||| Sbjct 63363 TGCTGGGG 63356 >seq550 Length=300240 Score = 136 bits (150), Expect = 5e-27 Identities = 289/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || || || |||||| || || | || | |||||||||||| ||||| || Sbjct 95042 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 95101 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || || || | || | Sbjct 95102 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAACT-GCTGACGT 95160 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | | |||| ||| || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 95161 CAAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 95220 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| || | | || || |||||||| | ||| ||||| || |||| Sbjct 95221 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 95280 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||| | |||||||| ||| | ||||||||| || || || | ||| |||| Sbjct 95281 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 95340 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 172933 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 95341 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 95399 Query 172934 GCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCG---GGCACCATCTGTCTTC 172990 ||||| || | ||||||||| || ||| ||| |||| | ||||| |||||| Sbjct 95400 GCATCTTCAAGCTTGGGAATGTTGGTGATTCTGG---TGCGCTTGTGTCCATCGGTCTTC 95456 Query 172991 TTGAG 172995 || || Sbjct 95457 TTAAG 95461 >seq580 Length=301176 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || |||||| || || Sbjct 40680 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 40739 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| |||| ||| || || ||||||||||| Sbjct 40740 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 40799 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || || || || |||| |||||||||||| |||| Sbjct 40800 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 40840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348276086040