Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq555 311 9e-80 >seq555 Length=342432 Score = 311 bits (344), Expect = 9e-80 Identities = 1102/1700 (65%), Gaps = 40/1700 (2%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || ||| || ||| | ||| || | |||| ||| | ||||| || Sbjct 63299 TTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAGGTCGCTGAGCGTCCC 63358 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || || | ||||| || || |||| ||||||||||| ||||| || || | | Sbjct 63359 CAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCTATT 63418 Query 93853 CGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGACCCTGTTCAA 93911 | | | || |||| | | ||| | ||| |||| || | || || || ||||| Sbjct 63419 GAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATG-CCTCGCCAACGCTCTTCAA 63477 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || ||||| || ||| | || ||||||||||| | || | |||| ||||| Sbjct 63478 CGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTC 63537 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 ||| ||| || | ||||| ||||||| |||||| | ||||| || ||| || || Sbjct 63538 GATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGG 63597 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 ||||| ||| |||| | | |||| | || || ||||| ||||||||| || Sbjct 63598 TATCGGTCTCAACATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGG 63657 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 | |||||| |||| || |||||||| |||||||||||| | || || ||||| || Sbjct 63658 TGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGA 63717 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 ||| |||||| | | | ||| | || || |||| | ||||| |||||| |||| Sbjct 63718 CCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGA 63777 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 || | ||| ||||| |||| ||||||||||| || || | | ||| | || Sbjct 63778 TGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGA 63837 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 |||||||||||||| ||||| || || || || ||||| | |||||| | || || Sbjct 63838 GCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGA 63897 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TT 94390 ||| || | || ||||| || || ||||| || ||||| | || | || | Sbjct 63898 TTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGG-TGACGAGT 63956 Query 94391 TTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTA---TGGATG 94447 |||| | || | || ||||| | |||| | | | | ||| | | | | Sbjct 63957 TTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGG-ACG--CTGTAAGCGAACCGTCAAGG 64013 Query 94448 CTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCT 94507 | |||||| ||| | ||| | || ||| ||||| |||| || | |||| Sbjct 64014 CCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCC 64073 Query 94508 TGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCT 94567 | | ||||||| ||| ||| ||||||||||||| || ||||||| |||||| ||| Sbjct 64074 TCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCT 64133 Query 94568 CGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACC 94627 | || || |||||||| || ||||||| || | || || ||| | ||||| || ||| Sbjct 64134 CCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCTGCAACT 64193 Query 94628 TGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC--ACGTCTACTGCTTCGTT 94685 ||| ||||||| ||| |||| ||| | ||| ||| | |||||| || Sbjct 64194 TGGCCTCCATCGCCCTCCCCACCTTCAT-CGACCCTGTTACCAAGGTCTACGATTTTAAG 64252 Query 94686 CGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAAT 94745 || |||| | ||| |||| | || | |||| |||||| | | || Sbjct 64253 CG-TCTGCATGAG---------GTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCAT 64302 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGG--CGGAGAACTCAAACCTGAAGCATCGGCCC 94803 ||||| |||| |||||||| || | || || || ||| || || || ||| Sbjct 64303 CGACATCAACTATTACCCCGTTGAAGAAGCTCGTCGA--TCCAACATGCGTCACCGTCCC 64360 Query 94804 ATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT-GCGTCTGCCCTACGA 94862 ||||| ||||| || |||||| |||| || || | |||| || | || || ||| ||| Sbjct 64361 ATCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGGGGTATG-CCTTCGA 64419 Query 94863 CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT 94922 || || ||| ||||||| || | || ||||| | ||| || ||| || | Sbjct 64420 GTCCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCTCT 64479 Query 94923 GAAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGAT 94981 | | ||| | | ||||| || ||| ||| | |||| | | || || | Sbjct 64480 CGAGCGATCGTGCGAGTTGGCTCA----GGAGCACGGCACCTACGAGACATACCAAGGTT 64535 Query 94982 CGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGT 95041 ||||| ||||| |||||| |||| | |||||||| | ||||| | || | Sbjct 64536 CGCCCGCTTCCCAGGGAGAACTTCAGTACGACATGTGGGGTGTCACTCCCTCCGACCTCT 64595 Query 95042 ACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG 95101 ||||||| | || ||| | | ||| |||||| | ||| | || | Sbjct 64596 GGGACTGGGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTTCGTAACTCACTTTTGT 64655 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||| ||||||||||| || || || |||||| | ||| |||||||| ||||| | Sbjct 64656 TGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGC 64715 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 ||| ||| |||||| | ||| | || || || || || ||||||| ||| ||||| Sbjct 64716 CCTACACTTCCAACATCTACTCTCGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACC 64775 Query 95222 AGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || || || || ||| | ||| | ||| |||| | ||||||| Sbjct 64776 CCTGGTTGCTCCGCGAGTTG--GTCGAACAGGGACTTTGGAACGACACAATGAAGAACCG 64833 Query 95280 ACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGG 95338 | | | ||| | | |||||| |||| ||| |||| || || || |||||| Sbjct 64834 AAT-CATCGCTCACGGTGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGA 64892 Query 95339 CGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCC 95398 |||||||||||| || ||||||||| ||||| | || ||||| || |||| | Sbjct 64893 AGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATC 64952 Query 95399 GCGGGCCCTTCATCTGCCAG 95418 | || | ||||| |||||| Sbjct 64953 GAGGTGCTTTCATTTGCCAG 64972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718790779480