Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq540 87.8 1e-12 >seq540 Length=238440 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118174 GTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCA 118233 |||| || ||||| || || || || |||| ||||| || || || || || || || | Sbjct 187139 GTTTGCCATCGCGTCCTGCTCTGCCCGTCTCCTGATAGTAGCCTTCGAGAGACTTTGGTA 187198 Query 118234 TACTGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCG 118293 ||||||||| || ||||| ||||||||||||||||| ||||| ||||| || || | Sbjct 187199 CCGAGTGATGTATGACGAACCGTACGTCGGGTTTATCGATACCCATGCCGAAAGCGATGG 187258 Query 118294 T 118294 | Sbjct 187259 T 187259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381769482513672