Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq555 149 6e-31 seq578 98.7 1e-15 seq650 86.0 6e-12 >seq555 Length=342432 Score = 149 bits (164), Expect = 6e-31 Identities = 364/542 (67%), Gaps = 25/542 (5%) Strand=Plus/Minus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 ||| || || |||| || ||||| || ||| |||| | | ||||| | ||| || Sbjct 64207 GGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTC 64148 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT-GC 153714 || |||||||||| ||| || ||| || | || | ||| ||| ||||| || || Sbjct 64147 GGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGC 64088 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACC 153774 | ||||| ||| |||| ||| | || ||||||||| || | |||| ||| | Sbjct 64087 A-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG-CG 64030 Query 153775 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 || || | ||| || || || | |||| ||||| |||||| |||||| Sbjct 64029 TACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCG 63970 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||||||||||| |||||||||||||| |||||||| |||| | || ||| Sbjct 63969 TAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCAC 63910 Query 153894 ATCAGCGACCACATATCG----TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 || |||||||| |||| || || | ||| | |||||| ||||| || ||||| Sbjct 63909 ATGAGCGACCA---ATCGCCATTCTGC-TCGACCCTCTTCATGAAGAGATCGGGGACCCA 63854 Query 153950 GAGCGCGTACATGAGGTCGCGCGC-----CTTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 || ||||| | ||| || || || ||| | |||| || | ||||| | Sbjct 63853 AAGAGCGTAGAAGAGCTCACGGGCACGAACTTCC--TCCTTACCGTGGTTCTTGCG---C 63799 Query 154005 AGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCT 154064 | | ||| | | ||| || | |||||| || |||||||||| || | |||||| Sbjct 63798 AAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCA 63739 Query 154065 TTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATG 154121 |||| || || || || ||||||| || | | ||||||||||| || | |||| Sbjct 63738 GGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATG 63679 Query 154122 GG 154123 || Sbjct 63678 GG 63677 >seq578 Length=360407 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || || ||||| || ||||| | | Sbjct 306190 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCA 306249 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || || ||||| ||||| ||| || || | Sbjct 306250 AAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 306309 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | ||| ||||| || || ||||| Sbjct 306310 TTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTA 306369 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 306370 ACAAAGATCTGCAT 306383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | |||||||| || |||||||||||| Sbjct 207537 CCGCCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 207478 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| |||||||| || || || || Sbjct 207477 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 207418 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | |||||| | ||||| | Sbjct 207417 ATACCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCAATGGTGTCAGAGGACTCGA 207360 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| ||| || ||||| |||||||| Sbjct 207359 CCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | | ||||| || ||||||||||| || | ||||| ||||| Sbjct 207292 AACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTC 207233 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| || || || | |||| |||||||| || || ||||| || ||||| ||||| Sbjct 207232 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 207173 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| || || | |||| || | |||||| | | ||| ||||||| || | || | Sbjct 207172 GATCTTGGCCTTGACATTG-TCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCT 207114 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || || ||||| |||||||| Sbjct 207113 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 >seq650 Length=146785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||| | | Sbjct 130940 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCA 130999 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 131000 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 131059 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||||| ||||||||||| | || | || ||||| || Sbjct 131060 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257977061360