Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq555 190 3e-43 seq580 127 3e-24 seq550 125 9e-24 >seq555 Length=342432 Score = 190 bits (210), Expect = 3e-43 Identities = 1111/1750 (63%), Gaps = 55/1750 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||||||||| | ||||||||||| |||| ||||||| | || | ||||| || | Sbjct 65079 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAAGTG 65020 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || || || ||| || | || || | || || || ||||| Sbjct 65019 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 64960 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || ||||| || ||||| || || | ||||| | ||| ||||| ||||| || Sbjct 64959 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 64900 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 ||||| ||||| ||| || |||||| | || |||||||| |||||||| || Sbjct 64899 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCG----TG 64844 Query 115798 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850 | | |||| | | |||||| || || ||| || || | ||| || || Sbjct 64843 AGCGATGATTCGGTTCTTCATTGTGTCGTT---CCAAAGTCCC-TGTTC----GA-CCAA 64793 Query 115851 CACGAGGTGCTTA------TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-T 115903 | || || || ||||| || || ||||| || || || | ||| | Sbjct 64792 CTCGCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGT 64734 Query 115904 AGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGG 115963 ||||||||| ||||| ||||| |||||||| ||| |||||||| || || || | Sbjct 64733 AGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAG 64674 Query 115964 CTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCT 116023 | |||||||||||||||| | ||| ||| || ||||| | ||| ||| Sbjct 64673 CAGTGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCT 64614 Query 116024 TGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 |||| | ||||||| || | | | | | | ||||||| || |||| || Sbjct 64613 TGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACAC-CCCACATGTCGTACTGAAGT 64555 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || ||||| || ||||| || | ||||||| || | ||| | ||| ||||| Sbjct 64554 TCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAAC 64495 Query 116143 TCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 116201 ||| | | |||| ||||| || ||||| || || ||||| || || | | |||| Sbjct 64494 TCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACG 64436 Query 116202 CTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTT 116260 ||||| ||| || || || | || || | || ||| |||| |||||||| | Sbjct 64435 ACGCGCCTCAGGGGACTCGAAGGC-ATACCCCATGATCATGAATGCATCGGCGAGACCCT 64377 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 | ||||||| || || || || || | ||| || || ||||| || ||||| | Sbjct 64376 GAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGT 64317 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 || | || | ||||| | | | || | || ||| || | || | || ||||| | Sbjct 64316 AATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCA 64257 Query 116381 GCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 | | |||| | || | || | | || | | || |||||||| || Sbjct 64256 GACGCTTAAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAG 64198 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| || || |||| | |||||| ||| |||||| || ||||| || || | Sbjct 64197 GCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGG 64138 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || | ||| ||||| || | |||||| || || ||||| |||| || |||||| Sbjct 64137 TTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTG 64078 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 ||||| || | || | || ||||| || || |||| ||| || || | ||| | | || Sbjct 64077 TAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTC 64018 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 | | || | || || || || ||||| ||||||| |||||| ||| Sbjct 64017 TGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCTC 63959 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 |||||| ||| || ||| || | || || || || | || || | ||| |||| Sbjct 63958 AAACTCGTCA-CCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACC 63900 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | ||| || ||| |||| |||||||||||| || |||| ||| || || |||||| Sbjct 63899 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 63840 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 | || || ||| |||| || | || || || ||||| || | || || | || Sbjct 63839 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 63780 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAG 116911 ||||| |||||| || || | ||| | || | | || | |||| |||| Sbjct 63779 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTG---TTACCAC 63723 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT--C 116969 | |||| || || | || || ||| || || || ||||| || | |||||| | | Sbjct 63722 CTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGC 63663 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || || || || || ||| ||| | | | | | ||||||| | Sbjct 63662 TGA--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAG 63605 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| ||||| || || ||| ||||| || || | |||| || |||||||||| Sbjct 63604 ACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCC 63545 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 |||||||||||| |||| | | || ||||| || ||| | || || || || Sbjct 63544 GTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGT 63485 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGT 117208 ||| ||||||||||| ||||| | || | || || ||| ||| ||||| | || Sbjct 63484 ACCGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGAGGTTGT 63426 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 | ||||| | || |||||| | ||||||||||||| | || ||||| | || Sbjct 63425 ACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCA 63366 Query 117269 TGTATTGGGG 117278 ||| ||||| Sbjct 63365 TGTGCTGGGG 63356 >seq580 Length=301176 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || |||||| ||||| Sbjct 40681 GCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCG 40740 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| ||| ||||| ||||||||||| Sbjct 40741 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGATA 40800 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || || || |||| |||||||| || |||| Sbjct 40801 CCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 40840 >seq550 Length=300240 Score = 125 bits (138), Expect = 9e-24 Identities = 259/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | |||| |||||||||||| ||||| || Sbjct 95042 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 95101 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || || || | || | Sbjct 95102 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAACT-GCTGACGT 95160 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | | || | ||| || || || ||||| | |||| ||||| | |||| ||| | Sbjct 95161 CAAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 95220 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | | || || |||||||| | ||| || || || |||| Sbjct 95221 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 95280 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||| | |||||||| ||| | |||||||| || || || | ||| |||| Sbjct 95281 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 95340 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 176953 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 95341 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 95399 Query 176954 GCATCGTCCAACTTGGGAAT 176973 ||||| || | ||||||||| Sbjct 95400 GCATCTTCAAGCTTGGGAAT 95419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501732117080