Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq580 147 3e-30 >seq580 Length=301176 Score = 147 bits (162), Expect = 3e-30 Identities = 378/570 (66%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| ||||| ||| ||| || |||||||| |||||||||| |||||| || Sbjct 40669 AAGAGGAGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAG 40728 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| || ||| |||||||| || || | ||||| | || Sbjct 40729 AAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCT 40788 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| || || ||||| ||||| || ||||| | |||| | || | ||| ||| Sbjct 40789 GAGAAGAAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTG 40848 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||| | | |||| | ||||||||| |||||||| || | || ||| |||| Sbjct 40849 CGGTCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCG 40908 Query 160154 ACGGCGTTAAACA--ATCT-GTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGC 160210 ||||||| ||| | | || | |||||| | || ||| || | || || Sbjct 40909 ACGGCGTCAAAGAGGAACTCGCGCTGCTCGGGC---TCGCGGATGTAGGTGTCGATGAGG 40965 Query 160211 TTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTC 160270 |||||| |||| | ||| | || || || ||||| || |||||| || Sbjct 40966 AGCGAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGG 41025 Query 160271 GCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 ||||| ||| ||||| |||| | | | || || | || || | ||| Sbjct 41026 GCCTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCG 41085 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 || | || || ||||| || | |||||||||||||| || | ||||| | |||||| Sbjct 41086 TCAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGC 41145 Query 160391 CTCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGC 160449 | || ||||||| ||| | ||| | || | || | || || ||| |||| || Sbjct 41146 TTGTTGTCCCAGTCGTG-AAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGA 41204 Query 160450 AGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||||| || | |||||||| |||||| Sbjct 41205 AGCCTCGGCCTTCTTGTACATTTGCCAGAT 41234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148113179280