Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq580 307 1e-78 seq578 120 3e-22 seq650 102 8e-17 >seq580 Length=301176 Score = 307 bits (340), Expect = 1e-78 Identities = 404/554 (73%), Gaps = 13/554 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||| ||| || | |||||||| | || ||||| ||||| ||| || | Sbjct 40677 GCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 40736 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || || | ||| || ||| || ||||| Sbjct 40737 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAA 40796 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || || |||||||| || || || || || ||||| |||| ||||| | ||| | | Sbjct 40797 GATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCT---TGCGGTC 40853 Query 133074 G---ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||| || || |||||||||||||| | |||||| || || || |||| ||| Sbjct 40854 GTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGC 40913 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAA 133188 || ||| | | | | | | || | || ||| | |||||||||||||||| ||| Sbjct 40914 GT-CAA-AGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAG 40971 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 || |||| ||||| | ||||||||| ||| || || ||||| ||||| || |||||| Sbjct 40972 TAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCG 41031 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | |||| || || | ||| |||||||| || |||||||||||||| ||||| Sbjct 41032 GCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAA 41091 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGC 133365 |||||||| ||||| || ||||| |||||| || |||||||||||||| | | Sbjct 41092 GCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTG 41151 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||||| | ||||||||| ||||| | |||||| ||||||| || || |||||| Sbjct 41152 TCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCG 41211 Query 133426 GCTTTTTTGTACAT 133439 || || |||||||| Sbjct 41212 GCCTTCTTGTACAT 41225 >seq578 Length=360407 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || |||||| || | Sbjct 207311 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 207370 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| |||||| | || || Sbjct 207371 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 207429 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 207430 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 207489 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| | || || ||| | | ||||| Sbjct 207490 CATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGTCTTCGTGGCGG 207537 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| |||||||| || || |||||| |||| |||||| | Sbjct 306386 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 306327 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || ||||||||| | || Sbjct 306326 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 306268 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | || || || ||||| || || | |||||||| ||||| Sbjct 306267 TCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTCGGACTA 306208 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 306207 CAACATCCAGAAGGA 306193 >seq650 Length=146785 Score = 102 bits (112), Expect = 8e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||||||| | || || ||| | |||||| | | | |||| | || | Sbjct 131109 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGC 131051 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || || || Sbjct 131050 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 130991 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || |||| ||||||||| |||||||||||||| ||||| Sbjct 130990 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 130943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168342209920