Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq558 408 5e-109 seq518 176 6e-39 seq554 123 3e-23 >seq558 Length=284561 Score = 408 bits (452), Expect = 5e-109 Identities = 776/1137 (68%), Gaps = 8/1137 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || || || || || |||||||| ||||| |||| || || Sbjct 32861 ATGGCGGCCTGGACGGCGGCACCATAGGCAACGGCCTCATCAGGGTTGATCGACTTGTTG 32802 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || |||||| || | || | | | | || | || ||||| || || || Sbjct 32801 AGCTCACGACCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGGATACGAGTGGAA 32742 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | || || || | || || |||||||| ||||| || || Sbjct 32741 CCACCGACGAGGACAATCTCGTGGACGGAACCCTTGTCGATCTTGGAGTCACGGAGAACC 32682 Query 7202 TTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || || || | | || ||| | ||| || || ||||| ||||| || Sbjct 32681 TTCTCGACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCGCAGAGCTCCTCGAAACGGGC 32623 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || ||||| || | || ||| | | ||| || ||||| ||||| || Sbjct 32622 ACGGGTGATGGAAGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATTTCGATGGTGGT 32563 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || |||||||| || || || | ||| ||||| Sbjct 32562 CTGGGCAGCCGACGAGAGAGTGCGCTTAGCACGCTCACATGCAGTGCGGAGACGTCGAAG 32503 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||| | ||| || | || ||||| | || || || ||||| | |||||| Sbjct 32502 AGCACGAGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTG 32443 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | ||||| || |||||||| | ||| || || || ||||| || || Sbjct 32442 GTTGACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTGGCCTT 32383 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| ||||||||||| | ||||| | | | ||||||||| || ||||| || || || Sbjct 32382 GACCTCAAAGATACCCTCCTCAATTGTAAGGAGCGAAACATCGAAGGTACCTCCTCCGAG 32323 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || ||||| |||||| | || | || | ||||| ||||||||||| ||||| || Sbjct 32322 ATCGAAGATGAGAACGTTCTTCTCACCTTCGGTCTTCTTGTCGAGACCGTAAGCGATGGC 32263 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || || |||||||||||||| | | ||| || || | ||| | | ||||| Sbjct 32262 GGCAGCAGTAGGCTCATTAATAATACGCATAACGTTGAGACCCGAAATGATACCGGCATC 32203 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || || || || || || ||||| ||||| || ||||| || ||||| || ||| | Sbjct 32202 CTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCATCCTT 32143 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| | |||||| || | || ||| | || ||| ||| |||||||| || || Sbjct 32142 GACGGTTCCACCGAGGTAGGCCTCGGCGGTCTCACGCATCTTGAGGAGAACCATGGAGGA 32083 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 | ||||| | | || ||| | ||||| || | || | ||| |||| | Sbjct 32082 GACTTCTTCGGGAGTGAAGACCTTCTTCTCACCCTTGTACTCGATGCGGATC-TGGGGCT 32024 Query 7861 ATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920 |||| | | || ||||| | | ||| | ||||| ||| || |||| Sbjct 32023 TGCCGC--CGGTGTTGACAACCTCGAAAGGCCAGTGCTTCATGTCGGACTGAACCTCGGC 31966 Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 || |||||| | || ||||||||||| ||||| || || ||||| | ||||||||| Sbjct 31965 ATCGTCAAACTTGCGGCCAATAAGACGCTTGGCATCGAAGACGGTGTTGTGGGGGTTCAT 31906 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 || |||||||| || || || ||||| |||||||| || || || ||||| Sbjct 31905 AGCGACCTGGTTCTTGGCGGCATCTCCGATGAGACGTTC---CGAGTCGGTGAAGGCGAC 31849 Query 8041 GTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 ||| || ||||| || || || || |||||||| ||||| | || || ||||| || || Sbjct 31848 GTATGAGGGGGTAGTGCGGTTACCCTGGTCGTTGGCAATGACCTCGACACGGTCATTCTG 31789 Query 8101 CCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 ||||||| | || || || || || || || | ||| |||||||| || | ||||| Sbjct 31788 CCAGACGGCAACACAGGAGTAGGTAGTACCGAGATCGATACCGATGGCCTTGGTCAT 31732 >seq518 Length=347958 Score = 176 bits (194), Expect = 6e-39 Identities = 463/695 (67%), Gaps = 24/695 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || || |||| ||| Sbjct 330433 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTTGCAAGCACCTCGAAGACACCA 330492 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||||||||| || ||||| ||||| || || | | || | Sbjct 330493 GAGTCAATCGAGAGGAGCGAAACATCGAAGGTACCTCCACCAAGATCGTAGACGATGATC 330552 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| | || || ||| || |||||||| |||||||| || || || || || Sbjct 330553 TGAGACTCGCCATCCTT---CTTGTCAAGACCGTAAGCGATAGCGGCAGCGGTAGGCTCG 330609 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| ||||| ||| ||| ||||| || || || | || || || || || ||||| Sbjct 330610 TTAACGATACGGAGAACGTTAAGGCCGGCGATGGTACCAGCGTCCTTGGTGGCCTGTCGC 330669 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| ||||| || ||||| || || || |||| ||||| || | ||| || Sbjct 330670 TGAGCGTCGTTGAAGTAAGCGGGGACGGTGACAACGGCGTGGGTGACCTTGTGACCAAGG 330729 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || ||| ||||| | || | ||| |||| | Sbjct 330730 TAGGCCTCGGCGGTCTCCTTCATCTTCTGAAGGACCATGGCAGAGACCTCCTCAGGAGTG 330789 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG---CACCG 7873 || ||| |||||||||| | ||| | ||| |||||| || || || Sbjct 330790 AAGACCTTCTTTTCACCGTTGACGGTAACCTGAATGGCGGGTTTGCCCTTCTTCTCAACG 330849 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTG-GACCTGT-TGGTCCGAAAACT 7931 | | | | | | | || | | | ||||| || | | | | || | || Sbjct 330850 AGCTTGAAGGGA-AGGTGC---CTGGCGTC-CTTCTTGAGATCGGACTCGCCCCA---CT 330901 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | || || |||||||| || ||||| | ||||||| ||||||| ||| | |||| Sbjct 330902 TGCGACCAATGAGACGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGGGCGGCCTGGT 330961 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| |||||| || | || || ||||||||||| |||| Sbjct 330962 TCTTGGCGGCGTCTCCGACAAGACGCTCGGGAG----CG--AAGGCGACGTACGAGGGGG 331015 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA-CGCCG 8110 | |||| || ||||||||||| | || ||||| |||||| || || || || | || Sbjct 331016 TGATTCGGTTACCTTGGTCGTTGGTGATGATTTCAACGCGGCCG-TTGACCTGAGCACCA 331074 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||||| || || ||||| | ||| ||||| || Sbjct 331075 ACACACGAGTAGGTAGTTCCGAGATCGATACCAAT 331109 >seq554 Length=331082 Score = 123 bits (136), Expect = 3e-23 Identities = 302/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| ||||| |||||||| ||||| || | ||| || Sbjct 166629 GCATCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCC 166688 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| |||||||| ||||| Sbjct 166689 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTAAGGACCATG 166748 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || |||||| | | || ||||| | | Sbjct 166749 GAGGAGATCTCCTGGGGGGAGAACTGCTTGGTCTCACCGAGGTAGTTGACCTCAATGAAG 166808 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 166809 GGAG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 166865 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 166866 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 166925 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || ||||| || | || || || Sbjct 166926 TTCATGGCGGCCTGGTTCTTGGCGGCATCACCAATGAGACGCTC---GCTCTCGGTGAAA 166982 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| ||||| || || || || || ||||| || || || || || || ||| Sbjct 166983 GCGACGTACGAGGGGGTGGTGCGGTTACCCTGATCGTTGGCGATGATCTCGACACGCTCG 167042 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || ||| || ||||| || || || || || Sbjct 167043 TTGACCCACCAACCAACGCAGGAGTAGGTGGTACC 167077 Score = 122 bits (134), Expect = 1e-22 Identities = 272/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||| || ||| | | ||| ||||| || | | | | || || Sbjct 165521 TCCTCGAAACGAGCACGCGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGAGAGTCG 165580 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || |||||||| || | Sbjct 165581 ACCTCGACGGTGGTCTGGGTAACCGACGAGAGAGTGCGCTTAGCACGCTCACAGGCGGAA 165640 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | |||||| |||||||| | ||| || || || ||| | || || | |||| Sbjct 165641 CGGAGACGACGGGTGGCACGCGCATCACCAGAGATGTCGAGCTTGTTCTTGCGCTCAAAC 165700 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| || || || |||||||| | ||| || || Sbjct 165701 TCCTTCTTGAAGTGGTCAAGGAGGGCGTTGTCAAAGTCCTCACCACCAAGGTGGGTGTCA 165760 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | |||| ||| || ||||| | | ||||||||||||| Sbjct 165761 CCAGCGGTGGCCTTGACGGCGAAGACACCGCCAGTGATGTTAAGGAGCGAAACATCAAAC 165820 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC----GTCGTCTTTGTTCTTATC 7602 || || || || || || | ||||| |||||| | || | || ||| | || Sbjct 165821 GTTCCTCCTCCGAGATCGTAGATGAGCACGTTCTTCTCGGTGGACGACTTGG----AGTC 165876 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 ||||||||| ||||| || || || || || || || || ||||| || Sbjct 165877 GAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAG 165924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127139378920