Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq555 338 8e-88 seq580 140 4e-28 seq550 125 9e-24 seq518 89.7 6e-13 >seq555 Length=342432 Score = 338 bits (374), Expect = 8e-88 Identities = 1146/1756 (65%), Gaps = 67/1756 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || ||||||| || || | || ||||| || | Sbjct 63356 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCT 63415 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || || | || | ||||| ||||| Sbjct 63416 ATTGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTC-ATGCCTCGCCAACGCTCTT 63474 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || ||||||||| | | | ||||| || Sbjct 63475 CAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGA 63534 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| |||||| ||||| ||| || || Sbjct 63535 CTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 63594 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 ||||||||| | |||||||| | | | | | ||| ||| ||||| || Sbjct 63595 TGGTATCGGTCTCAACATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAA 63654 Query 111911 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||| |||| | ||||| | || ||||| || || || ||| ||| || || || Sbjct 63655 CGGTG--TCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTAC 63712 Query 111969 GTAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGT--CTATCT----TGAGCCATGG 112022 || |||||| ||| | |||| | || || | |||||| |||||| ||| Sbjct 63713 GTCGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGG 63769 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| ||||| || | |||||||| || ||||| ||||| ||| | ||||| | || Sbjct 63770 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGT 63829 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || ||||||| |||||| ||| | || ||||||||||||||||| || ||| || Sbjct 63830 GCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAG 63889 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | |||| ||||||| ||| | || || || || ||||| || |||| | ||| Sbjct 63890 AATGGCGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGGT 63949 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGT 112261 || |||||||| |||||| ||||||| || | | | | ||| || || Sbjct 63950 GACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGGAC-GCTGTAAGCGAACCGT 64008 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | | ||| | || || ||| ||||||| |||||||| |||| || | Sbjct 64009 -CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTT 64067 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 || || ||||| ||||| ||||| ||| || || ||||| | ||| |||| Sbjct 64068 TCATCCTCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCA 64127 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || | ||||||||||| || |||||| | || | | | | |||||| ||||| | Sbjct 64128 AGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCT 64187 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 112500 | ||| | || || ||||| ||||||| | | || || | || ||| | |||| Sbjct 64188 GCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACGATT 64247 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | | || || || || | ||| | || || ||| | |||| | || || | Sbjct 64248 TTAAGCGTCTGCATGAGGTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCATCGACA 64307 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || | |||||||||||| |||||| ||| || ||| | |||||||| || ||| Sbjct 64308 TCAACTATTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCATCGGTA 64367 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGA 112678 ||||||| || |||||||| |||| |||||| || | | | | || || || ||| Sbjct 64368 TCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGG--GGTATGCCTTCGAGTCCCC 64425 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 || ||| | || | || || || ||||| || || ||||||||||| || || Sbjct 64426 TGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA-GC 64484 Query 112739 GA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || || | |||||||| ||| | || | || || || | | ||||| || ||| Sbjct 64485 GATCGTGC-GAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCCCGCT 64543 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA---C 112853 || || || | ||||| | || |||||| |||| || || || ||| | Sbjct 64544 TCCCAGGGAGAACTTCAGTACGACATGTGG---GGTGTCAC------TCCCTCCGACCTC 64594 Query 112854 TGGGAC---GCT---CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 |||||| ||| ||||||| |||| || | |||||||||||| |||||| Sbjct 64595 TGGGACTGGGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTTCGTAACTCACTTTTG 64654 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 ||||||| ||||| || || || ||| || |||||||| || || ||||| || Sbjct 64655 TTGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAG 64714 Query 112968 CCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 |||||||| | |||||||| ||| | | || || || || || | | ||||| Sbjct 64715 CCCTACACTTCCAACATCTACTCT-CGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAA 64773 Query 113027 ---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | | ||| || || || || || || ||| | | |||||| | Sbjct 64774 CCCCTGGTTGCTCCGCGAGTTGGTCGAACAG---GGACTTTGGAACGACACAATGAAGAA 64830 Query 113084 TC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAAT 113140 | |||| | | ||||| ||||| ||||| | | ||| || || || Sbjct 64831 CCGAATCATCGCTCA---CGGTGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTAT 64887 Query 113141 TAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGC 113200 |||||| | ||| || || ||||| ||| | ||||| |||| ||||||||||| Sbjct 64888 CAAGAAGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGC 64947 Query 113201 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCA 113258 ||||| ||| |||||| | |||| ||| | ||| | | || ||| Sbjct 64948 CGATCGAGGTGCTTTCATT--TGCCAGTCGCAGTCGCTCAATATCCACCTGTCCGCTCCT 65005 Query 113259 ACGAT--GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGG 113316 ||| | ||| ||||| |||| |||||| | ||| | ||||||||||||||||| |||| Sbjct 65006 ACGTTCGGTC--AGCTCACTTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGG 65063 Query 113317 GGATGTATTACCTCCG 113332 | | || |||||||| Sbjct 65064 GTACCTACTACCTCCG 65079 >seq580 Length=301176 Score = 140 bits (154), Expect = 4e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| |||||||| ||| | || ||||| || || |||||||||||||| || |||| Sbjct 40840 CCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCT 40781 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | | | || | |||||||||||||| ||||||||||| |||||| |||||| |||| Sbjct 40780 TTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACG 40721 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||||||||||||||| || ||| || ||||| Sbjct 40720 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGC 40681 >seq550 Length=300240 Score = 125 bits (138), Expect = 9e-24 Identities = 240/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 95076 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCGGTCATGATCATGATA 95135 Query 176783 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 176841 | || || || || || | || || | || | ||| || || || ||||| | ||| Sbjct 95136 CTGCCGTATCGCAAACT-GCTGACGTCAAGGTACTGCTTGCCGTGCTGCAGACCGATGAT 95194 Query 176842 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAAC 176901 || ||||| | |||| ||| || ||| ||| | || || ||||| || Sbjct 95195 CTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTCGCTTCACGGAC 95254 Query 176902 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAG 176961 ||| | ||| |||||||| ||||| |||||||| | || ||||| ||| | || Sbjct 95255 ATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCCACCTCGACAAG 95314 Query 176962 ACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTT 177018 ||| || || || |||| || || || ||||| || || | |||||| || || ||| Sbjct 95315 ACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGAGTGCAGTCCTT 95374 Query 177019 GCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | | | |||| ||| || ||||| ||||| || | |||||||| Sbjct 95375 GGC-TTTCCTGCC--ACCAGCGTTGTTGGCATCTTCAAGCTTGGGAAT 95419 >seq518 Length=347958 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTCAAAG 16121 ||||| |||||||||||||||| |||||| || || || | | ||| |||| Sbjct 178406 GCATCGATCTCATCAATGAAGATGATGCAAGGAGCGTGCTTCTTG---GCGTTGGCAAAC 178350 Query 16122 AGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || ||||| ||||| || ||||| ||||||||||| ||||| | | | || Sbjct 178349 ATGTCTCGGACACGGCTTGGA-CCGACACCGACAAACATCTCTACAAACTCGGACCCAGA 178291 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 | | ||| || ||| || ||||| ||| | || ||| || | |||||||| Sbjct 178290 AACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCTTACC 178231 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| || ||| | ||| | |||||| || |||||||||||||| Sbjct 178230 GGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCC 178183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736867633360