Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq555 260 2e-64 seq518 109 6e-19 >seq555 Length=342432 Score = 260 bits (288), Expect = 2e-64 Identities = 1116/1743 (64%), Gaps = 53/1743 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || || ||||||| |||||||| |||||| |||| | ||||| |||| | Sbjct 65079 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAAGTG 65020 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || | | || ||| || | || | |||||| ||||| ||||| Sbjct 65019 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 64960 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 ||| ||||| || |||||||||||||| ||| || || ||||||||||||||| Sbjct 64959 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 64900 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | ||||||||| ||||| || | || |||||| || |||||||| | Sbjct 64899 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCG---TGA 64843 Query 109648 ACCATGA---GATCCTTCATCTCTTTCGA-CCAGAGACCGACCTTTTTGAGA---TCGT- 109699 | |||| | | |||||| | | ||| ||| || || || || || ||| Sbjct 64842 GCGATGATTCGGTTCTTCAT-TGTGTCGTTCCAAAGTCC---CTGTTCGACCAACTCGCG 64787 Query 109700 ---CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 |||| || | ||||| || ||||||||||||||| || || ||||| Sbjct 64786 GAGCAACCAGGGG----TTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAGA 64731 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| ||||| ||||| ||| ||| | ||| || || ||||| | Sbjct 64730 TGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 64671 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 |||||||||| |||| | ||| ||| || ||||| | | || | | | || Sbjct 64670 TGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGC---TTGGCGATGTTA-GCC 64615 Query 109877 TTGCGT----CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGT 109932 ||| | |||| || | | | | ||| |||| |||||| || Sbjct 64614 TTGAGCGAAGCCCAGTCCCAGAGGTCGG---AGGGAGTGACACC---CCACATGTCGTAC 64561 Query 109933 TGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCG 109992 |||||| | |||| | ||| || ||||| | | | ||||||| | || | ||| Sbjct 64560 TGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGA 64501 Query 109993 GCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTC 110052 ||||||||| | || ||| || || || || || || ||||| || || || | ||| Sbjct 64500 GCCAACTCGCACGATCGCTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTC 64441 Query 110053 ATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAG 110111 | | || | ||| | ||||||| | ||| || | || || |||| || || Sbjct 64440 AAACGACGCGCCTCAGGGGACTCGAAGGCAT-ACCCCATGATCATGAATGCATCGGCGAG 64382 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 |||||||||||||| ||| ||||| || || |||||| || || ||||| ||| || Sbjct 64381 ACCCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAAC 64322 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||||| ||||| |||||||| | || | ||||| | | || | || || Sbjct 64321 GGGGTAATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTC 64262 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 ||| || | ||||| | || || | | || | ||||||| || || Sbjct 64261 ATGCAGACGCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGAT 64202 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACA 110351 || || | ||||| |||| ||| || | | | ||| || | ||||| || || Sbjct 64201 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 64142 Query 110352 CAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT-GCATGCAT 110410 | |||||| | ||| ||| ||| | ||||||||| || || ||| ||| ||| || | Sbjct 64141 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGT 64083 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||| ||| | || |||| || || ||||| |||| ||| ||||| | ||| | Sbjct 64082 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 64023 Query 110471 -CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | || | ||| ||| ||| ||| | | || || ||||||| ||| | Sbjct 64022 GCTTCTG-GGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGA 63964 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 |||||| || | ||||| || | ||| || || || ||| || | ||| Sbjct 63963 CGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGC 63904 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||||||| ||| || ||| |||||||||||||| || || || | ||| | || || Sbjct 63903 GACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAG 63844 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || || |||||| |||| | || || | ||| ||||| ||| | || | || || Sbjct 63843 AAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCA 63784 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------A 110763 | || |||||||||||| || || | |||| ||| | || || | |||| | Sbjct 63783 AAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTA 63727 Query 110764 CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || | |||| || || || || ||| |||||||| | |||||| || | || || Sbjct 63726 CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCG 63667 Query 110824 TCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC 110883 | | ||| || ||||| ||| || | |||||||| ||||| | Sbjct 63666 TTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTG 63607 Query 110884 ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAAT 110942 | ||| |||||||| || ||| || ||||| ||| |||| || | || || Sbjct 63606 AGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCT-TGAGGGTGTCGTAGAT 63548 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 || || ||||| || |||| ||| | || || || || || | |||||| | || Sbjct 63547 CCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGG 63488 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTT 111062 || || || |||||||| || || | |||||| | || ||| ||||| ||| Sbjct 63487 GGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTT 63428 Query 111063 GTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAA 111122 ||| || || | || | || | ||||||||||| | ||||| ||||||| Sbjct 63427 GTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGAT 63368 Query 111123 CAT 111125 ||| Sbjct 63367 CAT 63365 >seq518 Length=347958 Score = 109 bits (120), Expect = 6e-19 Identities = 324/489 (66%), Gaps = 17/489 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||||||||| || || | | |||| ||||||| | ||| ||||| ||| | Sbjct 178589 CGATCGAAACGACCAGGACGCATCAAAGCAGCATCAAGTACATCCGGTCGGTTAGTACCA 178530 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || || | | ||| || |||| |||||||| | | | || ||| Sbjct 178529 GCAAGCACAACGACGTGCTCCTCGGTGCCGAAGCCGTCCATCTGCACCAACAACTCGTTC 178470 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACC--TGCCGAACGCTTCTTAC 11677 | |||| || ||||||||||| | | || || | || ||| |||||| Sbjct 178469 AGCGTCGACTCTCGCTCATCGTTACCACCAAAGTTGCCTCCCTTTCC--ACGGCTCTTAC 178412 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | | ||| || |||||||| ||||| | ||| || || || | | || | ||| | Sbjct 178411 CAATAGCATCGATCTCATCAATGAAGATGATGCAAGGAGCGT-GCTTCTTGGC-GTTGGC 178354 Query 11738 AAAGTT--CACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| | | || ||||| | | || ||||| || |||||||| || || | | | Sbjct 178353 AAACATGTCTCGGACACGGCTTGGACCGACACCGACAAACATCTCTACAAACTCGGACCC 178294 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 |||| || || | ||| || ||| || |||||| || | || || || | |||| Sbjct 178293 AGAA-ACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCT 178235 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCC 11912 |||| ||||| || | ||| | ||||| ||| ||||| || |||||||| || |||| Sbjct 178234 TACCGGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCCGAGCTTCT 178175 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 ||| || |||||||||||||||| |||| |||| | || |||||||| Sbjct 178174 T--GTACTTTTCGGGCTTCTTGAGGAAGTTGACAAACTCCATGATCTCTTCCTTGGCCTC 178117 Query 11973 GTCGATACC 11981 ||| ||||| Sbjct 178116 GTCCATACC 178108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970750751400