Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq555 232 8e-56 seq580 96.9 4e-15 >seq555 Length=342432 Score = 232 bits (256), Expect = 8e-56 Identities = 899/1393 (65%), Gaps = 31/1393 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | |||||||| || ||||| || || |||||||| || ||| || Sbjct 64734 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAA 64675 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| ||||||| |||||| |||||||||||| | | |||| || Sbjct 64674 GCAGTGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCC 64615 Query 106055 TTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAG 106113 ||||| | ||||||| || | | || | || ||||||| || | ||||| Sbjct 64614 TTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACAC-CCCACATGTCGTACTGAAG 64556 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | || ||||| | ||| ||||| | ||||||| |||| || || | | |||||| Sbjct 64555 TTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAA 64496 Query 106174 TTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || | |||| || || | ||||| || ||||| || ||||| | | |||| Sbjct 64495 CTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAAC 64437 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 || ||| || || || || || | | || ||| |||| |||||||| | Sbjct 64436 GACGCGCCTCAGGGGACTCGAAGGCATACCCCATGATCATGAATGCATCGGCGAGACCCT 64377 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352 ||||||| | ||| || || | ||| ||||| || || || || |||||||| | Sbjct 64376 GAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGT 64317 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTTGT-GATTTCA 106408 || | || |||| |||| ||| | || ||| || || ||||| || ||| Sbjct 64316 AATAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACCTCA 64261 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 || || | | |||| | || | | || | | || |||||||| Sbjct 64260 TGCAGACGCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATG 64201 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || ||||| ||||| ||||| |||||| | | |||||| | ||||| || || Sbjct 64200 GAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAG 64141 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT-GCACGCATC 106587 | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || || Sbjct 64140 AGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTC 64082 Query 106588 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA- 106646 ||||||||| ||| | || | || ||||| ||||| |||| ||| || || | ||| | Sbjct 64081 CTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAG 64022 Query 106647 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 106706 | || | | || | || | || |||||||| |||||||| |||||| Sbjct 64021 CTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGAC 63963 Query 106707 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 |||||||| ||||| ||||| || || || || || || || | || | Sbjct 63962 GCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCG 63903 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 |||| | ||| || ||| |||| ||||||||| || || || | ||| || | | | Sbjct 63902 ACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGA 63843 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 |||| || | ||| | || || | ||| ||||| || || || |||||||| | Sbjct 63842 AGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAA 63783 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 106940 || ||||| |||||| ||||||| |||| || | | || ||||| | Sbjct 63782 AGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTAC 63726 Query 106941 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 107000 || |||| | || || || || ||| ||| || || || ||||| || | ||||| | Sbjct 63725 CACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGT 63666 Query 107001 --CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 107058 |||| ||| || || || ||| ||| | | | | |||||||| Sbjct 63665 TGCTGA--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTT 63608 Query 107059 CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGAT 107118 | || ||||| || || ||| ||||| ||||| | | || || | ||||| Sbjct 63607 GAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGAT 63548 Query 107119 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 107178 |||| ||| ||||| ||||| ||| || |||||| || || | ||| || || Sbjct 63547 CCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGG 63488 Query 107179 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGT 107237 ||||| || |||||||| ||||| | || ||| | || ||| ||| ||||| || Sbjct 63487 GGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGACATGAGGT 63429 Query 107238 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAA 107297 ||| ||||| | || |||||||| | ||||| || |||| || |||||||| | Sbjct 63428 TGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGA 63369 Query 107298 ACATGTATTGGGG 107310 ||||| ||||| Sbjct 63368 TCATGTGCTGGGG 63356 >seq580 Length=301176 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 40680 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 40739 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 40740 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 40799 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||| || || ||||| |||| || ||||| ||||||| Sbjct 40800 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 40840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975541796120