Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq557 100 3e-16 >seq557 Length=340206 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 154933 AGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGG 154992 ||||||| |||||||| ||||| ||||| ||||| || || || || || | || |||| Sbjct 231030 AGATCGTCCATGACAACGGTGGACAGGTCTATCTCGACGGTGCCAACCTTCAGGCTCAGG 231089 Query 154993 TAGGACTAGCAAAACCATGTGAGTATGG-TGCAGATGTATGTCATCTAAACTTACATAAA 155051 | | ||| | || ||| | | |||| ||| ||||| ||||| ||||| || || Sbjct 231090 TGGCACTCACCAACCCA-GCCATCATGGGTGCTGATGTGACACATCTCAACTTGCACAAG 231148 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAA 155111 || |||| || ||||| ||||||||||| || || || || ||||| |||| || || Sbjct 231149 ACTTTCTCCATCCCACACGGAGGTGGAGGACCCGGTGTGGGCCCTATCTGTGTCGCTGAA 231208 Query 155112 CA 155113 || Sbjct 231209 CA 231210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207637765920