Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq578 150 4e-31 seq650 136 9e-27 >seq578 Length=360407 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| ||||||||||| ||||| |||||||| | || || | ||||| || Sbjct 207292 AACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTC 207233 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || || || |||||||| ||||| ||||| || Sbjct 207232 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 207173 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || ||||||||||||||| || || || ||||| | ||||| Sbjct 207172 GATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTT 207113 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATGG 195146 || || | || || || || | ||||| | ||| Sbjct 207112 GCCGGTGAGGGTCTTGACAAAGATCTGCATCTGTGG 207077 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | ||| || | ||||||||| Sbjct 306175 ACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCTTCG 306234 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || || || || ||||| ||||| ||||| || Sbjct 306235 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGG 306294 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| || || || ||||| | |||||| Sbjct 306295 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTA 306354 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 306355 CCCGTGAGGGTTTTAACAAAGATCTGCAT 306383 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | ||| ||||| || || || ||||| |||| || || | |||||||| Sbjct 207519 ACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 207460 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || || ||||| || || ||||| ||| Sbjct 207459 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 207400 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || || || ||||| || | ||||| Sbjct 207399 ATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTG 207340 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || | ||||| Sbjct 207339 CCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 >seq650 Length=146785 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || | || || | || || ||| Sbjct 130925 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 130984 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || ||||| || || || || || ||||| || Sbjct 130985 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 131044 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | ||||| Sbjct 131045 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTA 131104 Query 195112 CCTGT 195116 ||||| Sbjct 131105 CCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471464538871