Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq624 150 1e-31 >seq624 Length=65696 Score = 150 bits (166), Expect = 1e-31 Identities = 432/664 (65%), Gaps = 34/664 (5%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 ||||| | || |||| ||||| || || | ||||||||| |||| || || || Sbjct 39812 TTTATGTTGAGCTTGGGGAAGGGCAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCT 39871 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 |||||||| |||||||||||||||||||| | | || | || || || Sbjct 39872 ACGTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAA 39931 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 ||||||| | ||| ||||| || ||||| | || ||||||||| ||||| ||||| || Sbjct 39932 TCGGTGACTTTAGCGATCATATAAGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACT 39991 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT--------CTCCGT 29983 || | ||| | || | || | ||||| | ||||| ||||||| | ||| Sbjct 39992 CCCAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCGA 40051 Query 29984 CGCTCA-CGTAA---------------------AACTGACACATGGTGTGGCACGGAGGA 30021 | || ||||| ||||| || | ||||||| ||||| Sbjct 40052 CCCTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGG 40111 Query 30022 AGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCT 30081 ||||||||||| | | |||||||||||||| || | | | ||| | | || Sbjct 40112 AGAGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGATCCTGCGATCGGTG 40171 Query 30082 GGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 30141 ||||||||| |||| ||| | | | | ||| || || || || || | |||| Sbjct 40172 GGGTTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAG 40231 Query 30142 TCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 || | | || |||| |||| ||||| || || || | ||| ||||| ||||| || || Sbjct 40232 TCGGTGTCGCA-GTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGG 40290 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30260 |||| || || ||| || ||| | ||| | | | ||| | || |||| || || Sbjct 40291 ACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGCGAGTCGAGGAACTCTCGTGATCC 40350 Query 30261 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30320 ||| |||||||||| | || ||||| || | || ||||||| || || Sbjct 40351 GTTACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGC 40410 Query 30321 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA-AAGACCCTCTTGGTCGTGAGGA 30379 || ||||| || |||||||||| || |||| ||| ||||| | ||| || ||||| | Sbjct 40411 CACAAACCAGAGGAGCTCCTCCAGTAC-GCCTCGCAAGAAGACACGCTTTGTGGTGAGCA 40469 Query 30380 GGGG 30383 | || Sbjct 40470 GAGG 40473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614049240749