Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq319 154 5e-33 >seq319 Length=680 Score = 154 bits (170), Expect = 5e-33 Identities = 153/197 (78%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 36632 GAATCAGCATTCCTTCAGGAAAGCTTGGTCGTGATCCCGCTGGAGCCGTCATTGAGTGGC 36691 |||| | |||||| |||||||||||||| || || | ||| || ||||| || | | Sbjct 658 GAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCTGTTGGTGCGGTCATGGAATTAC 599 Query 36692 CTTCAACTTCAAGCCAGAAAGCTGCCTCACTGGCCTTTTTGGTTGTGCTTACCCATCCCT 36751 ||||||| ||||||||||| || | |||||||| ||||||||| |||||||||||| || Sbjct 598 CTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTTTTGGTT-TGCTTACCCATCTCT 540 Query 36752 CAGCATCTCGTTGAGTGAAGGTTCGAAATTCTGGTGTAAACATTCCAGCCTGAACATGAG 36811 | ||||| | || || ||||||| || | |||| ||||| || ||||||||||||| Sbjct 539 CCGCATCACCTTTGGTAAAGGTTCTAAGCTTAGGTGAGAACATCCCTGCCTGAACATGAG 480 Query 36812 AGAAGAATGGGTATTCA 36828 | || | ||||| ||| Sbjct 479 AAAAAACAGGGTACTCA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157048270280668