Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq555 306 7e-78 seq580 192 1e-43 >seq555 Length=342432 Score = 306 bits (338), Expect = 7e-78 Identities = 1143/1763 (65%), Gaps = 83/1763 (5%) Strand=Plus/Minus Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || ||||||||||| ||||| | |||| |||| |||||| || |||||| ||| | Sbjct 64950 TCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTGTAGAGCTTC 64891 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGC 212849 |||| || |||| ||||||| ||| || | || || | ||| ||| | | Sbjct 64890 TTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCGTGAGCGATGATTCGG 64831 Query 212850 TGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTG-------ACCA 212901 | | ||| |||||||| || ||| || || ||| ||| | |||| Sbjct 64830 TTCTT---CATTGTGTCGTTCCAAAGTCCC-TGTTCGACCA---ACTCGCGGAGCAACCA 64778 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 || ||||||| | |||||| ||||| | || || | | ||| | ||| |||| Sbjct 64777 GG----GGTTGACGACCTGGAATTCACCAGCAAGTACACGACGAGAGTAGATGTTGGAAG 64722 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||||| || ||||||| |||| ||||| || || |||||||||| Sbjct 64721 TGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGG 64662 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCC 213081 | |||| || || ||| | | ||||||| | ||||| | ||| |||| Sbjct 64661 GTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGAGCGAAGCCC 64602 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGC 213141 ||||||| ||||| | | || ||||||||| |||| ||| | Sbjct 64601 AGTCCCAG---------AGGTCGGAGGGAGTGACACCCCACATGTCGTACTG-AAGTTCT 64552 Query 213142 CTTTGCTCACGGGGCTGCCCT-GGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 | || | |||| ||| |||| | ||||| ||| ||||||| |||| |||| Sbjct 64551 CCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCG 64492 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 || || || || || |||| ||||||||| || || |||| | ||| | Sbjct 64491 CACGATCGCTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGACGC 64432 Query 213261 GCCTCTGGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||||| |||||| ||||| ||| | |||| ||| |||| || || ||||| || Sbjct 64431 GCCTCAGGGGACTCGAAGG-CATACCCCATGATCATGAATGCATCGGCGAGACCCTGAAC 64373 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAA-GGGGTAAA 213378 ||||| |||||||| | ||| | || ||| || | | | || || ||| ||||||| Sbjct 64372 ACCGATACCGATGGGACGGTGACGCATGTTGGA-TCGACGAGCTTCTTCAACGGGGTAAT 64314 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCA 213435 ||||| ||||||||||||||| | ||| || | |||| ||||| ||| | || Sbjct 64313 AGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGC---TTTGGCGACCTCATGCA 64257 Query 213436 GGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | || || | | || | | | | | || || ||||||||| || Sbjct 64256 GACGCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGG 64197 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || ||||| | | | | | |||||| ||||| |||||||| |||| Sbjct 64196 CCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGT 64137 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 || ||| |||||| || ||||||| ||||| ||||| ||| |||| ||||||| Sbjct 64136 TGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGT 64077 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 |||| ||| | || |||||||| ||| ||| | || || | |||||| | | Sbjct 64076 AGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCT 64017 Query 213676 TGGCCTTGACCACCCGCCTGACAGC-TCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 ||||||||| ||| | ||||| ||| | ||||||||| | |||||||| Sbjct 64016 GGGCCTTGACGGTTCGCTT-ACAGCGTCC---CTCAGCCTCGTAGCGCTCGTAGAGACGC 63961 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | || |||| || || | | || || || || ||| |||||||| | Sbjct 63960 TCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGAC 63901 Query 213795 CAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 || || || | | ||| ||| |||| |||||| || || |||||||| || ||| ||| Sbjct 63900 CAATCGCCATTCTGCTC-GACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAA 63842 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 || || | || | || ||| || ||| ||||||| || || || ||||| Sbjct 63841 GAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAA 63782 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970 || |||| |||||| ||||| |||||||| |||||||| || || | |||| || || Sbjct 63781 GACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACC 63722 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 ||||| || | || ||||||||| || || | ||| || | |||||| Sbjct 63721 TTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTG-- 63664 Query 214031 CTGTC--CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA---- 214084 ||| | ||||||| || || || || ||||||| | | | ||| ||||| Sbjct 63663 CTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAA---TGCA-ATGGATGTT 63608 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGAT 214144 ||| || || ||||||||| ||||||||||||||| ||| | | | || || ||| Sbjct 63607 GAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGAT 63548 Query 214145 GCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA 214204 ||| | || |||||| | | | | | | ||| || ||||||||| || || Sbjct 63547 CCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGG 63488 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCT 214264 | || | |||||| ||||| || |||||| | | |||| | || | ||| | Sbjct 63487 GGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTT 63428 Query 214265 GTAGGTCTC--CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATC 214322 ||| ||||| || ||| ||||| || ||| || | ||| | ||| Sbjct 63427 GTACGTCTCAATAGCACT--CTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATG 63370 Query 214323 AGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAG 214376 | |||||||||||| | ||| | | |||| ||| || ||||| |||||| Sbjct 63369 ATCATGTGCTGGGGACGCTC--AGCGACCTT----GCCGTTGATACGGAGCAAGTAGGAT 63316 Query 214377 CGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG-GTATGATCGTTCCCGTGTATGAGGGC 214435 ||||| || |||||||| || ||| || |||| | | | ||| | ||| |||| ||| Sbjct 63315 CGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAG-TCGCGCTCGTAGATGATGGC 63257 Query 214436 AGCGTCCAGCTCTTCCGCGTGCT 214458 | ||| |||| ||| ||||| Sbjct 63256 CGAGTCGAGCTGGTCCTTGTGCT 63234 >seq580 Length=301176 Score = 192 bits (212), Expect = 1e-43 Identities = 379/559 (68%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||| || |||| | || ||||| || ||||||| |||| |||| Sbjct 40670 AGAGGAGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGA 40729 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||| ||||||| || | || ||||||||||| || | || || ||||| | Sbjct 40730 AGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTG 40789 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| || || || || || || || ||| | ||| |||| | || || Sbjct 40790 AGAAGAAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGC 40849 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||| ||| ||||| || ||||||||||||| | || || ||||| | Sbjct 40850 GGTCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGA 40909 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 ||| ||||| || || || | | || | ||||| |||| ||| Sbjct 40910 CGGCGTCAAAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGC- 40968 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| | || ||||| | ||||| || ||||||||| ||||||||| | || Sbjct 40969 --GAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGG 41026 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| |||| || || | ||| | ||| | || || || ||||| || || | Sbjct 41027 CCTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGT 41086 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | ||||| || |||||||||||||| || | ||| || |||||||||| | |||| Sbjct 41087 CAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCT 41146 Query 48600 CATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || |||| | || | ||| ||| ||||| | ||| || | ||||||||||| | Sbjct 41147 TGTTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAG 41206 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 41207 CCTCGGCCTTCTTGTACAT 41225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524497713920