Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq555 280 3e-70 seq580 185 2e-41 >seq555 Length=342432 Score = 280 bits (310), Expect = 3e-70 Identities = 839/1273 (66%), Gaps = 39/1273 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || || ||||||||||||||||| |||||| | ||| | | ||||| || || Sbjct 64479 AGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGAC 64420 Query 221480 GTGAAGGGCATACGC-AGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||||| ||||| | | ||| |||| | | ||||| || ||||| || |||||||||| Sbjct 64419 TCGAAGG-CATACCCCATGATCATGAATG-CATCGGCGAGACCCTGAACACCGATACCGA 64362 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 |||| | ||| | | ||||||| || | |||||| ||||| ||| |||||| |||| Sbjct 64361 TGGGACGGTGACGCATGTTGGAT-CGACGAGCTTCTTCAACGGGGTAATAGTTGATGTCG 64303 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| |||| |||| | ||||| ||| || || | Sbjct 64302 ATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTAAAATCG 64243 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 | ||| | || |||| | | || | | ||||| | | |||| Sbjct 64242 TAGACCT-----------TGGTAACAGGGT-CGATGAAGGTGGGGAGGGCGATGGAGGCC 64195 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 | ||| || || || ||||| || | | |||| ||||| || || ||||||||| Sbjct 64194 AAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTG 64135 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||||| || |||| || || || |||||||| || ||||||||||||||| Sbjct 64134 GAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTAG 64075 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCT 221895 || || || ||| || ||||| ||||| | | || || || |||||| |||| Sbjct 64074 AGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCT-G 64016 Query 221896 GGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 ||| | || || | ||| || || ||||| | | || || | ||||| | Sbjct 64015 GGCCTTGACGGTTCGCTT-ACAGCGTCCCTCAGCC---TCGTAGCGCTCGTAGAGACGCT 63960 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||||| |||||||| ||| | ||||| || ||| | ||| ||||| || || Sbjct 63959 CAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACC 63900 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | || | | |||||||| ||||||||| || |||| ||| || || | |||| Sbjct 63899 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 63840 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 | || | || || |||||| |||| ||| || | || || | |||||||| | Sbjct 63839 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 63780 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 || | |||||| ||||| | |||| || | || || || |||||||| ||||| | Sbjct 63779 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTT 63720 Query 222195 GATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | || | | | ||| | |||||||| || || | || || | |||||| Sbjct 63719 GGTCGA-CGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 63661 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCC 222312 ||||||||| || |||||| | ||| | | | | | ||| | | || Sbjct 63660 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATG-CAATGGATGTTGAGACC 63602 Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372 ||||||||||||| || ||||||||||| ||| ||||||| ||||| ||| || || Sbjct 63601 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTC 63542 Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432 || ||||| ||||| | | | | || ||||| ||||| | ||||| | || || || Sbjct 63541 GATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACC 63482 Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGT 222492 |||||| || ||||| || ||| || |||||||| ||||| || | |||||| Sbjct 63481 GGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGT 63422 Query 222493 CTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 ||| || ||||| | |||| | |||||||| | || | |||| |||| Sbjct 63421 CTCAATAGCACTCT--CAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCATG 63364 Query 222551 TACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACGATTTTTCCAGA 222607 | |||||| | || ||| ||||| | || ||||| ||| ||| || || Sbjct 63363 TGCTGGGGACGCT---CAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGAGG 63307 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667 |||||||| || ||| ||||| || ||||| | ||| | | ||| | ||| ||| Sbjct 63306 GTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGC 63247 Query 222668 TCCGACTTGTGCT 222680 | |||||||| Sbjct 63246 TGGTCCTTGTGCT 63234 >seq580 Length=301176 Score = 185 bits (204), Expect = 2e-41 Identities = 439/657 (67%), Gaps = 26/657 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| || || || || Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 |||||||| | ||| |||| || |||| | | | |||||| || || || Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAA--CGACAACGAGCGTCACTTCATCT 41117 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || ||||| ||||| || ||||| || || |||| Sbjct 41116 CTCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAGC 41057 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| || || ||| || |||||| || ||||||||||||||||| | Sbjct 41056 GCTTCAGTTCCGAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATGA 40997 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||||| || || | ||| || || || ||||| || Sbjct 40996 TGGAGAACATCCACTCCGAAACCTACTC---GCTCCTCATCGACACCTACATCCGCGAGC 40940 Query 25769 TCG--CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || | | | ||| || || |||| ||| ||||| ||| ||| | |||||| ||| Sbjct 40939 CCGAGCAGCGCGAGTTC--CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGAAGAA 40882 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| |||||| | ||||||||| || | || || || | ||||| || || Sbjct 40881 GGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGT 40822 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || || || || ||||| ||| || || ||||| | ||||||||||| Sbjct 40821 TGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCT 40762 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || ||||||||| || ||| || |||||||||||| | ||||| Sbjct 40761 CAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGA 40702 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||||| |||| |||||||||||||| |||| || ||||| ||| | || | | Sbjct 40701 GGGTCTTCACACCGATTTTGCCTGCCTCCTCTTCA---GCCAC---CTCAAGAAGCGCGC 40648 Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || || |||||| || ||||| ||||| || || ||||||| ||||| Sbjct 40647 GCACCCCGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTT 40591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836521670720