Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq319 1200 0.0 >seq319 Length=680 Score = 1200 bits (1330), Expect = 0.0 Identities = 677/682 (99%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 28877 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 28936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 621 Query 28937 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 28996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 561 Query 28997 TTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTCAGGTGAG 29056 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 560 TTGGTT-TGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTTAGGTGAG 502 Query 29057 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTCTAAGTGACGGC 29116 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 501 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATAC-CACTTCTAAGTGACGGC 443 Query 29117 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 29176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 383 Query 29177 TCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 29236 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 382 TCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 323 Query 29237 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 29296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 263 Query 29297 TCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTAAGGCGACGTGCG 29356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAAGGCGACGTGCG 203 Query 29357 TCCTCAAGCTGCTCTTGTGTTAATAGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 29416 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 202 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 143 Query 29417 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 29476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 83 Query 29477 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 29536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 23 Query 29537 CGCTTTGGGCAAACCAAGACAG 29558 |||||||||||||||||||||| Sbjct 22 CGCTTTGGGCAAACCAAGACAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128373313070002