Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq319 1187 0.0 >seq319 Length=680 Score = 1187 bits (1316), Expect = 0.0 Identities = 674/682 (99%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 27361 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 27420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 621 Query 27421 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 27480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 561 Query 27481 TTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTCAGGTGAG 27540 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 560 TTGGTT-TGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTTAGGTGAG 502 Query 27541 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTCTAAGTGACGGC 27600 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 501 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATAC-CACTTCTAAGTGACGGC 443 Query 27601 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 27660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 383 Query 27661 TCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 27720 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 382 TCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 323 Query 27721 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 27780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 263 Query 27781 TCCTGGGGTAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTAAGGCGACGTGCG 27840 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAAGGCGACGTGCG 203 Query 27841 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGTTAAATCTATCAC 27900 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 202 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 143 Query 27901 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTAGCGGTGATAAT 27960 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 142 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 83 Query 27961 AGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 28020 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 23 Query 28021 CGCTTTGGGCAAACCAAGACAG 28042 |||||||||||||||||||||| Sbjct 22 CGCTTTGGGCAAACCAAGACAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124562145338956