Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq558 129 4e-24 seq578 107 1e-17 >seq558 Length=284561 Score = 129 bits (142), Expect = 4e-24 Identities = 363/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || ||||| |||| Sbjct 31741 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTTGCCGTCTGGCAGAATGACCGT 31800 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || ||||| || | || || Sbjct 31801 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATACGTCGCCTTCACC 31860 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | |||| ||| || |||||||| || || | || | || || || || Sbjct 31861 GACTCGGAACGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAAC 31920 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | | ||||| || || ||||| ||| || || || || Sbjct 31921 ACCGTCTTCGATGCCAAGCGTCTTATTGGCCGCAAGTTTGACGATGCCGAGGTTCAGTCC 31980 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA-GAAGC 474627 || ||| || |||||||| |||| | || || || || || | || | | | Sbjct 31981 GACATGAAGCACTGGCCTTTCGAGGTTGTCAACACCGGCGGCAAGCCCCAGATCCGCATC 32040 Query 474628 AA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| || | || || |||||| | Sbjct 32041 GAGTACAAG--GGTGAGAAGAAGGTCTTCACTCCCGAAGAAGTCTCCTCCATGGTTCTCC 32098 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | ||||| ||| | || || || | || | ||||| || | Sbjct 32099 TCAAGATGCGTGAGACCGCCGAGGCC-TACCTCGGTGGAACCGTCAAGGATGCCGTCGTC 32157 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || ||||| ||||| || || || ||||| || | ||| Sbjct 32158 ACTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 32217 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | |||||||||||||| || || || ||||| | ||||| ||| Sbjct 32218 TCGGGTCTCAACGTTATGCGTATTATTAATGAGCCTACTGCTGCCGCCATCGCTTACGGT 32277 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 32278 CTCGACAAGAA 32288 >seq578 Length=360407 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| || ||||| || || ||||| | || || Sbjct 207304 ACGGAGGCGGAGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGT 207245 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||| || || ||||| || ||||||||||||||||| Sbjct 207244 ACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCC 207185 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| |||||| ||||| || || | | || || Sbjct 207184 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAG 207125 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| || || || || Sbjct 207124 GGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTG 207086 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| |||| || || || | || || || | || Sbjct 207532 ACGAAGACGGAGGACAAGATGCAAAGTCGAC--TCCTTCTGGATGTTGTAGTCGGAGAGG 207475 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 207474 GTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATA 207415 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || |||||||| |||||||| ||||| ||||| || |||| | ||| Sbjct 207414 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACCTCA 207355 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| | |||||| || || || || Sbjct 207354 AGAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTG 207314 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || || ||||| ||| || || | || || || | || || Sbjct 306162 ACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 306221 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| |||||||| || ||||| || |||||||| |||||||| Sbjct 306222 GCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCC 306281 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| ||||| || || || || | | | | || | Sbjct 306282 TTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA-CCTCGA 306340 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || ||||| ||||| || ||||| || || || Sbjct 306341 GGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 306380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268148615970524