Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq555 212 7e-50 seq580 96.9 4e-15 >seq555 Length=342432 Score = 212 bits (234), Expect = 7e-50 Identities = 896/1394 (64%), Gaps = 31/1394 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| || ||||| | |||||||| || Sbjct 63356 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCT 63415 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| ||| ||| || | ||| || | ||||| ||||| Sbjct 63416 ATTGAGACGTACAACCTCATGTCGCAAAAGTACTTT-ACTCATGCCTCGCCAACGCTCTT 63474 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || ||||| || || ||| | || || |||||| || ||| ||||| || Sbjct 63475 CAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGA 63534 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| || || Sbjct 63535 CTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 63594 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||||| || | |||||||| | | | | ||| ||| || || || Sbjct 63595 TGGTATCGGTCTCAACATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAA 63654 Query 75511 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||| |||| | ||||| | || ||||| || || || ||| ||| || || || Sbjct 63655 CGGTG--TCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTAC 63712 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCATGG 75622 || | |||| || | |||| | || || | || ||||| | || || ||| Sbjct 63713 GTCGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGG 63769 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| || | |||||||| || || || ||||| ||| | || || | ||| Sbjct 63770 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGT 63829 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | || ||||| | | || ||| | || || || ||||||||| |||| ||| || Sbjct 63830 GCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAG 63889 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||| | ||||| || | || || || || || || || ||||| ||| Sbjct 63890 AATGGCGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGGT 63949 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGA-CTGT 75861 || |||||||| |||||| || || | ||||| | || |||| | || Sbjct 63950 GACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGGACGCTGTAA-GCGAACCGT 64008 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | | || | | ||| | || || ||| | || ||||| ||||| || | || | Sbjct 64009 -CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTT 64067 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 || || |||||||| ||| |||| ||| ||||| ||||| | || || |||| Sbjct 64068 TCATCCTCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCA 64127 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || |||| || || ||||| ||||| | |||||| | | |||||| ||||| | Sbjct 64128 AGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCT 64187 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 |||| ||||| || |||||||| || | | || | | || | |||| Sbjct 64188 GCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACGATT 64247 Query 76101 ATGAAAAACTTCATGAAATCAC-AAAG--AT-TGTTACCAAAAATCTAAACCGAGTCATT 76156 | | || ||||| || | |||| || || ||| || | ||| |||| Sbjct 64248 TTAAGCGTCTGCATGAGGTCGCCAAAGCCATCTG----CAAGAACTTGAACAAGATCATC 64303 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATT 76216 |||| || | ||| |||||||| || || || || ||||| ||| | || || Sbjct 64304 GACATCAACTATTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCATC 64363 Query 76217 GGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCA 76276 ||| | |||||||| |||||||| |||| ||| || | | || || || || || Sbjct 64364 GGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGGGGTATGCCTTCGAGTCC 64423 Query 76277 GATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 ||| || |||| | | ||||| || ||||| || ||||| | || ||| Sbjct 64424 CCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCTCTCGAG 64483 Query 76337 GCGAGT-TGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGC 76395 ||| || || |||||| | | || || |||| ||||||| | ||||| ||||| Sbjct 64484 -CGATCGTGCGAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCCCGC 64542 Query 76396 GTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT-CAACTACGACT 76454 ||||| || | ||||||| || ||||||| | | | || | | || |||| Sbjct 64543 TTCCCAGGGAGAACTTCAGTACGACATGTGGGGTG-TCACTCCCTCCGACCTCTGGGACT 64601 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 ||| | ||||||| |||| || | |||||||||||| |||||| |||||| Sbjct 64602 GGGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTTCGTAACTCACTTTTGTTGGCAC 64661 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| || || || ||| || |||||||| || || ||||| || || |||| Sbjct 64662 CCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCCCTACA 64721 Query 76575 CAACAAACATCTAC 76588 | | ||||||||| Sbjct 64722 CTTCCAACATCTAC 64735 >seq580 Length=301176 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||||| ||||| || |||| ||||| || || |||||||||||||| || || | Sbjct 40840 CCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCT 40781 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 | | | || | ||| | |||||||| ||||||||||| || || |||||| || | Sbjct 40780 TTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACG 40721 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || || || || |||||||| ||| || |||||| Sbjct 40720 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCC 40680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564283073440