Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq558 89.7 2e-12 >seq558 Length=284561 Score = 89.7 bits (98), Expect = 2e-12 Identities = 234/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 || || || || || ||||||| ||||||||| ||||| | |||| ||||| Sbjct 268126 TCGATACCATCCTCTCCGTAGGCGAACTGAATGACGTTGTTGGTTGAGTTTCGAACGGTA 268067 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 || || | | ||| | ||| || | ||||| |||||||||||||||||||| Sbjct 268066 CCGTCGTAGCAGACCATCACGTCCTCGAGCGCCTTGACCAAACGACGCTGAATATAACCG 268007 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | || || || || || || || ||||| ||||||| |||| || |||||| Sbjct 268006 GTCTCTGCCGTCTTAACGGCCGTGTCGATAAGACCCTCACGACCTGCCATGGCGTGGAAG 267947 Query 302671 AATAGCTCTT--CCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 || | || | |||| || || | | | ||| |||| ||||||||||| | Sbjct 267946 AAGAATTCCTGAGCGGT--AAGACCTCGGAGGTACGAGTTCTCGACGAAACCACGACTTT 267889 Query 302729 CGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 |||| | |||| |||||| || || || || | | || | ||| | |||| Sbjct 267888 CGGGAGTGAAGTCGTCCTTGGTGAAATGAGGAAGACTGCGGTGGCGGAAACCGAAGGGGA 267829 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | ||||| || || ||| ||| ||||| | |||| ||||||||| || || Sbjct 267828 TGCGCTTACCCTCGACGGACTGTTGTCCAACACACGCTGACATCTGCGAGATGTT 267774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804154486281