Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq555 156 5e-32 seq580 143 3e-28 seq552 95.1 1e-13 seq558 87.8 2e-11 >seq555 Length=342432 Score = 156 bits (172), Expect = 5e-32 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| || || |||| ||| ||||| |||||||||||||||| |||||| Sbjct 63720 TGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 63661 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | ||| | ||||| | || | || | | ||| Sbjct 63660 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGACCG 63601 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| ||||||||||| || ||| Sbjct 63600 ATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCG 63541 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| |||||||| || || || ||||||||| || ||||| | || ||| Sbjct 63540 ATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCG 63481 Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324 |||||||||||||| |||| Sbjct 63480 GCGTTGAAGAGCGTTGGCG 63462 >seq580 Length=301176 Score = 143 bits (158), Expect = 3e-28 Identities = 208/289 (72%), Gaps = 11/289 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | ||||| |||| ||| ||||||||||| |||||||| Sbjct 40698 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCGGGCATGAGACCGCGCTT 40757 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | || ||| ||||| ||||| || |||||||||||||| Sbjct 40758 CTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGATACCTTCGACGGCGGCAAA 40817 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | ||| ||||| || |||||| | || || ||||||||| | ||||| Sbjct 40818 GGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTC---GTTGATCCATCGAAGGGCCCA 40874 Query 869359 GTCGGCCTTTTTCCTCACCGAC-GGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCCT 869414 |||||||| ||| | | |||| || | || |||| |||| ||||||| | | || Sbjct 40875 TTCGGCCTTCTTCTTGA-CGACGGGGATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCT 40933 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || || || ||||||||||| |||||||| ||||| || Sbjct 40934 GCTCG---GGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTTTC 40979 Score = 127 bits (140), Expect = 2e-23 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| || | ||| Sbjct 40981 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCGGCGGCCTGG 41040 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||| ||| ||||| ||||| |||||||| Sbjct 41041 ACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAAGCGGCGAAG 41100 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 || || |||||||| ||| ||||| ||||||| |||| ||||| |||||| | Sbjct 41101 AAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCG 41160 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | |||||| | |||||||||||||||| || ||||||||||| ||| Sbjct 41161 TGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTG 41220 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 41221 TACATTTGCCA 41231 >seq552 Length=388190 Score = 95.1 bits (104), Expect = 1e-13 Identities = 272/413 (66%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAAC-GAGCA 1573834 || || ||| | ||||||||||| || || ||||||||| | || || ||| ||| | Sbjct 84205 CTACCATGGGTGGAAAAGTATCGGCCGTTGCGGCTCGACGATGTGGTTGGTAACAGAG-A 84263 Query 1573835 CGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCA-ACCTCTTGCTGG 1573893 | || ||| | ||| | || | | ||||||| || || ||| |||| | | Sbjct 84264 CACCATCGACCGTCTGAAAGTGATTCAGAACGACGGCAAC-TGTCCACACCTTCTCATCT 84322 Query 1573894 CGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGG 1573953 |||| ||| |||| || |||||||| || ||||| ||||||| || | | Sbjct 84323 CGGGATTGCCGGGCATCGGAAAGACCACTTCAGTCCTCTGTCTCGCGCGTGCACTTCTCG 84382 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 | | ||| | | || | ||||| || |||||||| || || || || || || || Sbjct 84383 GAGATGCCTACAAAGAAGGTGTGCTTGAGCTCAACGCTTCCGATGAACGAGGTGTGGATA 84442 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCC 1574073 |||| || || | |||||| || ||| |||| || || ||||| || | | Sbjct 84443 TCGTCCGAAACAAGATCAAGAACTTTGCCCAGAAGAAAGTCTCGCTCCCGCCAGGCAGGC 84502 Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133 ||||| | |||||||||| || ||||| | | || | || || ||||| || ||| Sbjct 84503 ACAAGATCGTCATCCTCGATGAAGCCGATAGTATGACACCAGCAGCACAGCAAGCTTTGC 84562 Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 | ||||||||| | || ||||||| || || || | | || |||||| Sbjct 84563 GTCGCACCATGGAGATCTACTCCAACACAACACGTTTCTGCTTTGCTTGCAAC 84615 >seq558 Length=284561 Score = 87.8 bits (96), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 ||||||| |||||| ||||||||||||| || ||||| |||||||||||| ||| Sbjct 266911 TCAACCTCAGTGTCACGCCTCCCTACAACGCCGATTTCGACGGTGACGAGATGAACTTGC 266970 Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACA--CCATGAGCGTGTCGCT 507831 |||| || ||| ||| | | || |||||| | |||| | ||| | || | | Sbjct 266971 ACGTTCCGCAGAGCGAAGAGACTCGTGCCGAGCTCTCGCAAATTGCAT--GGGTTCCTCG 267028 Query 507832 CAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 ||| |||||||| ||||||||||||||| |||| || Sbjct 267029 ACAGATTGTGTCGCCTCAGGCCAACAAGCCCGTCATGGG 267067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107080687881021