Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq580 196 8e-44 seq555 125 1e-22 seq558 91.5 2e-12 >seq580 Length=301176 Score = 196 bits (216), Expect = 8e-44 Identities = 245/333 (74%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | ||||| ||| ||| ||||||||||| |||||||| Sbjct 40698 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCGGGCATGAGACCGCGCTT 40757 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| |||| || | ||| ||||| ||||| || ||||||||||| Sbjct 40758 CTTGAGCCAGAAGATCGAGGCAAAGGA---GCCTGAGAAGAAGATACCTTCGACGGCGGC 40814 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | ||||| ||||| || || ||| || || || ||||||||| | || Sbjct 40815 AAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTC---GTTGATCCATCGAAGGGC 40871 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG---TGGTC 794573 ||| || ||||| ||| | || ||| | || |||| |||| ||||||| | | Sbjct 40872 CCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAACTCGCG 40931 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 || |||| || || || ||||||||||||||||||||||||||| || |||||||| Sbjct 40932 CTGCTCG---GGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTTTCGGAGTGGAT 40988 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || || ||||||||| || || ||||| Sbjct 40989 GTTCTCCATCATGATCTGGAAACCGTAGAAGCA 41021 Score = 129 bits (142), Expect = 9e-24 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||||| | |||||||| ||||||| || | ||||| || Sbjct 41017 AAGCATCGGGCCTCGGCGGCCTGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTG 41076 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| |||||||| ||||| |||||||| ||| ||||||||||||| | Sbjct 41077 ACGATACCGTCAGAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTG 41136 Query 796261 TCGCTGAGC---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| ||||| | |||||| | ||| | |||||||| |||||||||||| Sbjct 41137 TCGTTGAGCTTGTTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTC 41196 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 || ||||| ||||||||||| |||||||| | ||| ||| || Sbjct 41197 CAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTGT 41238 >seq555 Length=342432 Score = 125 bits (138), Expect = 1e-22 Identities = 183/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || || || |||| ||| ||||| |||||||||||||| | |||||| Sbjct 63720 TGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTG 63661 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||| || || | ||| | ||| | | || | || | | ||| Sbjct 63660 ACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGACCG 63601 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||| | || || | || || || |||||||| || ||| Sbjct 63600 ATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCG 63541 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| |||||||| | || || ||||||||| || ||| | | || ||| Sbjct 63540 ATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCG 63481 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 63480 GCGTTGAAGAGCGTTGGCG 63462 >seq558 Length=284561 Score = 91.5 bits (100), Expect = 2e-12 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| |||||||| || ||| ||||||||||||| || ||||| |||||| Sbjct 266901 ACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGATTTCGACGGTGACGAG 266960 Query 429693 ATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTCGCCCACA--CCATG 429749 |||||| ||||||| || ||| || ||| | | || ||||| || | || | |||| Sbjct 266961 ATGAACTTGCACGTTCCGCAGAGCGAAGA-GACTCGTGCCGAGCTCTCGCAAATTGCATG 267019 Query 429750 GGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 429799 | || | | || |||||||| ||||||||||||||| |||| || Sbjct 267020 G--GTTCCTCGACAGATTGTGTCGCCTCAGGCCAACAAGCCCGTCATGGG 267067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916170554938007