Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq578 125 5e-24 seq650 100 2e-16 >seq578 Length=360407 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 306172 AGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCT 306231 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||| || | || | || |||||||| Sbjct 306232 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 306291 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| || | ||| || ||| Sbjct 306292 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTC 306351 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || |||||||||||||| Sbjct 306352 TTACCCGTGAGGGTTTTAACAAAGATCTGCAT 306383 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| |||| ||| ||||||||||| || ||||| ||| | || |||| Sbjct 207294 AGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 207235 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || ||||| || | || | || |||||||| Sbjct 207234 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 207175 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | |||||| || | ||| |||||| Sbjct 207174 TGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 207115 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||||||||| Sbjct 207114 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| ||||| || Sbjct 207502 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 207443 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || |||||| Sbjct 207442 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 207383 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || |||||| |||| || |||||||| || || | ||||| || Sbjct 207382 GTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 207323 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 207322 AAAGATCTGCAT 207311 >seq650 Length=146785 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||||| |||||||| ||| |||| | || Sbjct 130922 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 130981 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 130982 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 131041 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 131042 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 131101 Query 34946 TTTCCCGT 34953 || || || Sbjct 131102 TTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689969831347