Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq555 257 2e-63 seq578 145 7e-30 seq580 140 3e-28 seq650 102 8e-17 >seq555 Length=342432 Score = 257 bits (284), Expect = 2e-63 Identities = 1190/1856 (64%), Gaps = 53/1856 (3%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || ||||| | ||||||||||| ||| | ||| |||| ||||| ||| Sbjct 65082 GTACGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAA 65023 Query 148011 GACA--TGAGCGTGTACGTCGGGTGCGG-CACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | | ||| || |||| || |||| || | ||| | |||||| |||| | Sbjct 65022 GTGAGCTGACCGA--ACGTAGGA-GCGGACAGGTGGATATTGAGCGACTGCGACTGGCAA 64966 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGC 148126 ||||| || || || || |||||||| || |||| | || || | | ||||||||| | Sbjct 64965 ATGAAAGCACCTCGATCGGCGGCCATGTCGATGA-TGGCCTTCTGCGAGATCTCCCAGAC 64907 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||| ||| ||||||| | ||||| || ||| || | || | ||||| | Sbjct 64906 AGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACC 64847 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 ||| || | || | || |||| ||| | | || | |||| || || Sbjct 64846 GTGAGCGATGATTCGGTTCTTCATTGTGTCGTTCCAAAGTCCCTGTTCGACCAACTCGCG 64787 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGT 148305 || || | | || || ||||| || || || || || || || || ||| || | || Sbjct 64786 GAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAGATGT 64728 Query 148306 TGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGG 148365 || || | || || || |||||||| |||||| ||||| ||||| || |||| Sbjct 64727 TGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGG 64668 Query 148366 GCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAG 148425 ||||| || | || || ||||| || | |||| | || || || ||| || | Sbjct 64667 GCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGAGCG 64608 Query 148426 CCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC 148485 |||||||||||||| || || || || ||||||||||||||| || || Sbjct 64607 AAGCCCAGTCCCAGAGGTCGGAGGGAGTGACACCCCACATGTCGTACTGAAGTTCTCCCT 64548 Query 148486 GGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA-G 148544 || |||||| || | ||| | ||| | |||||| || |||| ||||| | Sbjct 64547 GGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACG 64488 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCC 148604 |||| ||||| ||| ||| ||| || |||||| || ||| ||| | | || ||| Sbjct 64487 ATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCA--AACGACGC- 64432 Query 148605 GACTC---GCTTTCGTACGGCATACGC-AGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 | ||| | ||| | ||||||| | | || || || ||||| || ||||| || Sbjct 64431 GCCTCAGGGGACTCGAA-GGCATACCCCATGATCATGAATGCATCGGCGAGACCCTGAAC 64373 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 || | || ||||| ||||| |||||||| | || || || | || || | Sbjct 64372 ACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAATA 64313 Query 148721 GTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCA 148779 |||| |||||||||||||| |||| | ||| | | || | | |||| Sbjct 64312 GTTGATGTCGATGATCTTGTTCAAGTTCTTGCAG-ATGGCTTTGGCGACCTCATGCAGAC 64254 Query 148780 ATTCAAAATCGTA---CTTGTCATCTA---CGATGCATCGGTTCACGGCGATAGAGGCTA 148833 | ||||||||| |||| | | ||||| | | | |||||| ||||| | Sbjct 64253 GCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCCA 64194 Query 148834 GATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGC 148893 ||||| || || |||||| ||||| |||||| | ||| |||| ||| || ||| Sbjct 64193 AGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGG 64134 Query 148894 TGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT-GCACGCGTCCTTGTAC 148952 ||| ||||| || | |||||| || ||| ||||| ||| ||| ||||||||||| Sbjct 64133 AGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAG 64075 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGC 149012 || ||| | || || || || ||| | || | ||| || ||| | | Sbjct 64074 AGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG--CGTACCAGAGCTTCT 64017 Query 149013 GCGCGCACTTG-CTGCTCGT----AGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCT 149067 | || |||| | | ||| |||| ||||| |||||| || || |||| Sbjct 64016 GGGC---CTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGCT 63960 Query 149068 CGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACC 149127 | ||| | || |||||||| ||| | || |||||||||| || |||||||||||||||| Sbjct 63959 CAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACC 63900 Query 149128 ACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGA 149187 | |||| | | | || | |||||| || |||||||| ||||| || ||||| | || Sbjct 63899 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 63840 Query 149188 GGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 | || || || || || || ||| ||||| || ||| | || | Sbjct 63839 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 63780 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCT 149304 |||| |||||| ||||||||||| | || | || || |||||| || || | Sbjct 63779 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTT 63720 Query 149305 GGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCC---ACTGG 149361 ||||||||| || | ||||||| || || || | ||| || | || || ||| Sbjct 63719 GGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGA 63660 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 || ||||| ||| | |||| | |||| | || | || | ||||| | Sbjct 63659 CA---CCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGTTGAGAC 63603 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 |||| || ||| || ||| ||||| || ||| ||| || |||||| || | Sbjct 63602 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGT 63543 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 |||| ||| ||||||||| | || || ||||| | | || || | || | Sbjct 63542 CGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGTAC 63483 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 |||| ||| | || || ||| || ||||| || || || ||| | | ||||| Sbjct 63482 CGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACG 63423 Query 149602 ACTC--GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 ||| ||||| | || ||||| | ||| || || || | || || ||||| | ||| Sbjct 63422 TCTCAATAGCACTC--TCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCAT 63365 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 ||||| || ||||| || || ||| || |||||||||| || || || Sbjct 63364 GTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCTCGAGGGT 63305 Query 149720 CTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||| | || ||| | ||||||| |||||||| ||| | ||||| | ||||| Sbjct 63304 CTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGA 63249 >seq578 Length=360407 Score = 145 bits (160), Expect = 7e-30 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||||||||||||||| || |||||||| | | | | ||| ||||||||| Sbjct 207286 ATGAAGGGTGGACTCTTTCTGAATGTTGTAATC--CGAGAGGGTACGGCCATCCTCGAGC 207229 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| |||||||| || ||||| || ||||||||||| |||| Sbjct 207228 TGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 207169 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | ||||| || |||| ||||| ||| |||||| Sbjct 207168 TTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCG 207109 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 207108 GTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | || || ||||||||||| Sbjct 207507 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGCC 207449 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||| || || || || || |||||||| ||||| ||| Sbjct 207448 GGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTT 207389 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | || ||| || || | |||| ||| |||||||||| ||| Sbjct 207388 GACGTTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAAGT 207329 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 207328 CTTGACAAAGATCTGCAT 207311 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| ||| | || ||||||||||| | Sbjct 306186 GGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCA-TCTTCGAGCTGCTTAC 306244 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || || || || ||||||||||| |||||| || Sbjct 306245 CAGCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 306304 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || |||| ||||| || || || || || | Sbjct 306305 TGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGG 306364 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 306365 TTTTAACAAAGATCTGCAT 306383 >seq580 Length=301176 Score = 140 bits (154), Expect = 3e-28 Identities = 348/521 (67%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| ||||| || ||||| || |||||||| || || || |||||||| || || Sbjct 40675 AGGCAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTG 40734 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| || | ||||||| ||| || ||| Sbjct 40735 AGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAG 40794 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | || || ||| ||||||||| || | ||||| || || || ||| |||| | Sbjct 40795 AAGATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCC---TTGCGG 40851 Query 120820 TCG---ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAAC 120876 ||| ||||| | |||||| |||||||| || ||| || || ||||| Sbjct 40852 TCGTTGATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACG 40911 Query 120877 GCGTTCAGCAGCATGTCGCGCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATT 120935 |||| | || | ||||||| | ||| || | || || | |||||| || Sbjct 40912 GCGTCAAAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTG-TCGATGAGGAGCGA 40970 Query 120936 GTACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC 120995 ||| |||| | ||| | | ||| |||| | || ||| ||| | | ||||| Sbjct 40971 GTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTC 41030 Query 120996 --CAGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCG 121053 | || || | || ||| | | ||||| ||||| || ||||||| ||| Sbjct 41031 GGCGGCCTGGACCTCGGAA-CTGAA-GCGCTCGACGAGGTTTTCGTTGACGATACCGTCA 41088 Query 121054 GCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 | ||||||||||| || || ||||| ||| ||||| ||||||| ||| |||||||| Sbjct 41089 GAAGCGGCGAAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTG 41148 Query 121114 TGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTC 121154 | | | |||| | ||||||||| ||||||| ||||| Sbjct 41149 TTGTCCCAGTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTC 41189 >seq650 Length=146785 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || | ||| ||||||||||||||| || Sbjct 130936 GGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACC 130995 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| ||||| || |||||||| |||||| ||| Sbjct 130996 AGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 131055 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| | |||||| || | ||||| ||| || || || Sbjct 131056 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416491512120