Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq555 114 1e-20 >seq555 Length=342432 Score = 114 bits (126), Expect = 1e-20 Identities = 613/966 (63%), Gaps = 29/966 (3%) Strand=Plus/Minus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTC 147518 |||||| || |||| |||||||| || ||| |||| | | ||||| | |||||| Sbjct 64207 GGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTC 64148 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT-GC 147577 || ||| |||||| ||| || ||| || | || | ||| ||| || || || || Sbjct 64147 GGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGC 64088 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACC 147637 | ||||| ||| |||| ||| | || ||||||||| || | || | ||| | Sbjct 64087 A-GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGG-CG 64030 Query 147638 TATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 || || | ||| || || || | |||| ||||| ||||| |||||| Sbjct 64029 TACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCG 63970 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||| |||||||| |||||||||||||| |||| | || ||| Sbjct 63969 TAGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCAC 63910 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| | | | | | || | ||| || ||||| || ||||| || Sbjct 63909 ATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGA 63850 Query 147817 GCGTACATAAGATCGCGCGC-----TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 ||||| | || || || || || | |||| || | ||||| ||| | Sbjct 63849 GCGTAGAAGAGCTCACGGGCACGAACTTCC--TCCTTACCGTGGTTCTTGCG---CAAGT 63795 Query 147872 TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTAC 147931 || | | ||| || | |||||| || |||||||||| || | ||||| || Sbjct 63794 CGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGAC 63735 Query 147932 GC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTT 147988 || || || || |||||||| | || | ||||||| || || || | |||||| Sbjct 63734 GCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCA 63675 Query 147989 CCAGGCCGCTCGCAG-TGCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCACT 148044 | | ||| | || | |||||||| || | || | |||| | || | Sbjct 63674 CGATACCG-TTGCTGACACCGTTGGTACCGGCA---ATGTAAGAGCCGGTACCACGAATG 63619 Query 148045 TCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CA 148102 || | ||| | || || || ||| || ||| || || || ||| | | | Sbjct 63618 CAATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT--CATGGCACAGGTCTTGA 63561 Query 148103 ATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACA 148162 || |||||| |||||||| ||| | || | | | | |||||||| | | Sbjct 63560 GGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGA 63501 Query 148163 TTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTT 148222 || || | || || || ||| || || || || || ||||| | |||| Sbjct 63500 GCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTT 63441 Query 148223 GACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCG 148282 | ||| | | |||||||||||||| || ||||| | ||||||||| || | | Sbjct 63440 GCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAG 63381 Query 148283 CGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGAT 148342 | || ||||||| ||||||||| || || || || || | |||||| ||| | | Sbjct 63380 CAACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGT 63321 Query 148343 ATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGA 148402 | |||||||| ||| |||| ||| | ||||| | || || ||||||| || Sbjct 63320 AGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGA 63261 Query 148403 TGGCCG 148408 |||||| Sbjct 63260 TGGCCG 63255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606952202680