Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq624 147 3e-30 >seq624 Length=65696 Score = 147 bits (162), Expect = 3e-30 Identities = 432/664 (65%), Gaps = 40/664 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC-AGCTGAATTTTCAGGGGCTCCAC 146930 || ||||||||||||||||| | ||||| | | ||||| || || || ||||| || Sbjct 39815 ATGTTGAGCTTGGGGAAGGG-CAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCTAC 39873 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||| | ||||||||| ||||| |||| | |||| | ||| |||| | Sbjct 39874 GTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATC 39933 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 ||| || | || | ||| || ||||||| | ||||||||| |||||||||||||| || Sbjct 39934 GGTGACTTTAGCGATCATATAAGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCC 39993 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--------CCCC---- 147098 || || | || | || | ||||||| || || ||||||| |||| Sbjct 39994 CAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCGACC 40053 Query 147099 ------------------GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 || || ||| | |||||||| | |||||||| || || || Sbjct 40054 CTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAG 40113 Query 147141 CGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTC--- 147197 |||||| | || || ||||||||| || || || || ||||| || Sbjct 40114 AGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCA--AG-ATCCTGCGATCGGT 40170 Query 147198 GGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTA 147257 |||||| |||| |||| || || || | || ||||| ||||| || || ||| Sbjct 40171 GGGGTTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTA 40230 Query 147258 GTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGG 147317 || || |||||||| ||| || |||||||| | ||| ||||||||||| ||||| Sbjct 40231 GTCGGTGTCGCAGTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGG 40290 Query 147318 CCCCAGGTCGCCGGGCTTTCTGTGCGAGAAG-CCCGCCCGCTTGAGAAACTCGGGGGACC 147376 |||| || || | ||| ||| | ||| | | ||| ||||| | || | Sbjct 40291 ACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGCGAG-TCGAGGAACTCTCGTGATC 40349 Query 147377 CGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCC 147436 ||| ||||||||||| ||| |||||| | | || ||| ||||| || ||| Sbjct 40350 CGTTACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAG 40409 Query 147437 GGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496 | |||||||| |||||||||| || || | | | ||||| | ||| ||||| |||| Sbjct 40410 CCACAAACCAGAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCA 40469 Query 147497 GGGG 147500 | || Sbjct 40470 GAGG 40473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583482799663200