Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq580 264 2e-64 seq555 132 7e-25 seq530 86.0 9e-11 >seq580 Length=301176 Score = 264 bits (292), Expect = 2e-64 Identities = 401/558 (72%), Gaps = 22/558 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| |||||||||||||| |||||| Sbjct 41235 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACC 41177 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | |||||| ||| | |||| ||||||| || |||||| Sbjct 41176 TCTCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCT 41117 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| || |||||| || || ||||| ||| ||||| | || Sbjct 41116 CTCACGTCCTTGCCTTCTT-CGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAG 41058 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | ||||| || | || ||||| ||||||||| Sbjct 41057 CGCTTCAGTTCCGAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATG 40998 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| ||||||||||||||||| |||||||||||| || || || Sbjct 40997 ATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCC- 40939 Query 1456072 GTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGT-GCCGTCGGTGAGGAAAAA 1456127 |||| || || ||||||| |||| |||| || | ||||| || | ||| || Sbjct 40938 --CGAGCAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATCCCCGTC-GTCAAGAAGAA 40882 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAA--GGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||||| ||||| | ||||||||| | | | |||| | ||| || ||||| | Sbjct 40881 GGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCAC----CTTCGCTGAGCGTC 40826 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | |||||||| |||||| || ||||| ||||| ||| || | | ||||| | Sbjct 40825 TCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCT 40766 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGC 1456304 |||||||||||||||| ||||||||||||| || ||| ||||| | ||| ||| Sbjct 40765 GGCTCAAGAAGCGCGGTCTCATGCCCGGTC-TCACCTTCTCTAACGAGCTCATCTCTCGT 40707 Query 1456305 GACGA-AGTTTTCACCCC 1456321 ||||| || ||||| || Sbjct 40706 GACGAGGGTCTTCACACC 40689 >seq555 Length=342432 Score = 132 bits (146), Expect = 7e-25 Identities = 209/293 (71%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 ||||||||| ||| || || ||| || |||| |||||||| || ||||| || || | Sbjct 63433 CATGTCGCAAAAGTACTTTAC-TCATGCCTCGCCAACGCTCTTCAACGCCGGTACCCCCC 63491 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| ||| |||||||| || || | |||||||| || |||||||| || |||| Sbjct 63492 ACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTCGATCGACGGGATCT 63551 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| || || | ||||||||| | ||||| || |||||| | | Sbjct 63552 ACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCT--CAA 63609 Query 260073 CACACAAGG--TGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC--CAAC 260128 || || | | || | | ||| | ||| | || || |||||||| ||| |||| Sbjct 63610 CATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGGT--GTCAGCAAC 63667 Query 260129 GGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || | ||||||||||| || || || ||| |||| || || ||||||||||| Sbjct 63668 GGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGACCA 63720 >seq530 Length=364700 Score = 86.0 bits (94), Expect = 9e-11 Identities = 166/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| ||| |||||| || || |||||||| |||||| |||| | ||| Sbjct 204228 TACTCCACCTACATCTACCGTGTTCTTAAGCAGGTTCACCCCGACACCGGT-----ATC- 204281 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | ||||| || || | ||||| |||| ||||||| | Sbjct 204282 TCGAACAAGGCCATGGCCATTCTTAACTCTTTCGTTCAGGACATCTTCGAGCGCATCGCC 204341 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||||| | || || | ||||||| || ||| |||| |||||| Sbjct 204342 ACTGAGGCTTCTAAGCTTGCTTCGTACAACAAGAAGTCGACCATCTCTTCGCGAGAGATC 204401 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || || || ||| | | ||| || || ||| ||||||| |||| || || Sbjct 204402 CAGACGGCTGTCCGTCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAGGT 204461 Query 725139 ACCA 725142 |||| Sbjct 204462 ACCA 204465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177742429839506