Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq578 102 7e-17 seq650 91.5 1e-13 >seq578 Length=360407 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || || ||||||||||| ||||| Sbjct 306192 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAA 306251 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | |||| | ||||||||| |||||| ||| | || Sbjct 306252 GATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 306310 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||| | |||||||| |||||||| | ||||| | Sbjct 306311 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAA 306370 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 306371 CAAAGATCTGCAT 306383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | ||| || | || || |||||||| || || || Sbjct 207274 CTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 207215 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | ||||| | ||||||||| |||||| ||| | | | Sbjct 207214 GATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 207155 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || ||||| | ||||| || || || || | || || || Sbjct 207154 GTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 207095 Query 35725 AAATATCTGCATTCTGTG 35742 ||| ||||||| |||||| Sbjct 207094 AAAGATCTGCA-TCTGTG 207078 >seq650 Length=146785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || ||||||||||| ||||| Sbjct 130942 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 131001 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 131002 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 131060 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| || |||||||| | ||||| || ||||| || Sbjct 131061 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 131109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789582302040