Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq319 1205 0.0 >seq319 Length=680 Score = 1205 bits (1336), Expect = 0.0 Identities = 678/682 (99%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 29973 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 30032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 621 Query 30033 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 30092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 561 Query 30093 TTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTCAGGTGAG 30152 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 560 TTGGTT-TGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTTAGGTGAG 502 Query 30153 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTCTAAGTGACGGC 30212 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 501 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATAC-CACTTCTAAGTGACGGC 443 Query 30213 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 30272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 383 Query 30273 TCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 30332 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 382 TCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 323 Query 30333 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 30392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 263 Query 30393 TCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTAAGGCGACGTGCG 30452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAAGGCGACGTGCG 203 Query 30453 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 30512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 143 Query 30513 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 30572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 83 Query 30573 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 30632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 23 Query 30633 CGCTTTGGGCAAACCAAGACAG 30654 |||||||||||||||||||||| Sbjct 22 CGCTTTGGGCAAACCAAGACAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122722160918006