Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq578 104 2e-17 >seq578 Length=360407 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || || || || ||||||||| | | |||| | ||||| ||||| Sbjct 207514 ATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 207455 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || ||||| | ||||||||||| ||||| || || | |||||| || || ||||| Sbjct 207454 CTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTT 207395 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | || || || || ||||| || | ||||| || Sbjct 207394 GGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 207335 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || ||| || |||||||| |||||| Sbjct 207334 CAAAGTCTTGACAAAGATCTGCATA 207310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | |||| | ||||||||||| ||||| Sbjct 306187 GTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCATCTTCGAGCTGCTTACCA 306246 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | || || || || ||||||| || Sbjct 306247 GCAAAGATGAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 306306 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 306307 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTT 306366 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 306367 TTAACAAAGATCTGCAT 306383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930707452856