Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq555 230 3e-55 seq580 96.9 4e-15 >seq555 Length=342432 Score = 230 bits (254), Expect = 3e-55 Identities = 899/1394 (64%), Gaps = 31/1394 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || || ||||| || || |||||||| || ||| || Sbjct 64735 GTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGA 64676 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| |||||| |||||||||||| | || |||| | Sbjct 64675 AGCAGTGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGC 64616 Query 110827 CTTGAGAACATCCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| || | | || | | | |||||||||| |||||| Sbjct 64615 CTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGA-CACCCCACATGTCGTACTGAA 64557 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || ||||| ||||| ||||| | | || || |||| || || | | ||||| Sbjct 64556 GTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCA 64497 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || || | ||| ||| || | ||||| || ||||| || ||||| | | |||| Sbjct 64496 ACTCGCACGATCG-CTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAA 64438 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 || ||| || || || || || | | || ||| |||| |||||||| Sbjct 64437 CGACGCGCCTCAGGGGACTCGAAGGCATACCCCATGATCATGAATGCATCGGCGAGACCC 64378 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 111124 |||||||| | ||| || || | ||| ||||| || || || || |||||||| Sbjct 64377 TGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGG 64318 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTT-GTGATTTC 111180 ||| | || |||| |||| ||| | || ||| || || |||| | || || Sbjct 64317 TAATAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACCTC 64262 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 ||| || | | |||| | || | | || | | || |||||||| Sbjct 64261 ATGCAGACGCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGAT 64202 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || ||||| ||||| ||||| |||||| | | |||||| | ||||| || || Sbjct 64201 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 64142 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGCAT 111359 | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || | Sbjct 64141 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGT 64083 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 |||||||||| ||| | || | || ||||| ||||| || | ||| || || | ||| | Sbjct 64082 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 64023 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 | || | | || | || | || |||||||| |||||||| |||||| Sbjct 64022 GCTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGA 63964 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 |||||||| ||||| ||||| || || || || || || || | || Sbjct 63963 CGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGC 63904 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 ||||| | ||| | ||| |||| ||||||||| || || || | ||| || | | Sbjct 63903 GACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAG 63844 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 ||||| || | ||| | || || | ||| ||||| || || || |||||||| Sbjct 63843 AAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCA 63784 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 63783 AAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTA 63727 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| |||| | || || || || ||| ||| || || || ||||| || | ||||| Sbjct 63726 CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCG 63667 Query 111773 T--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 111830 | |||| ||| || || || ||| ||| | | | | |||||||| Sbjct 63666 TTGCTGA--CACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGATGT 63609 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 | || ||||| || || ||| ||||| ||||| | | || || | |||| Sbjct 63608 TGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGA 63549 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 | |||| ||| ||||| ||||| ||| || |||||| || || | ||| || | Sbjct 63548 TCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGG 63489 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTG 112009 | ||||| || |||||||| ||||| | || ||| | || ||| ||| ||||| | Sbjct 63488 GGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGACATGAGG 63430 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | ||| ||||| | || |||||||| | ||||| || |||| || || |||||| Sbjct 63429 TTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATG 63370 Query 112070 AACATGTACTGTGG 112083 | ||||| ||| || Sbjct 63369 ATCATGTGCTGGGG 63356 >seq580 Length=301176 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 40680 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 40739 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 40740 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 40799 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| || || ||||| |||| || || || ||||||| Sbjct 40800 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 40840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026402664800