Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq555 228 1e-54 seq580 138 1e-27 seq550 131 2e-25 >seq555 Length=342432 Score = 228 bits (252), Expect = 1e-54 Identities = 1120/1757 (64%), Gaps = 69/1757 (4%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| | ||||||||||| |||| ||||||| | || | ||||| || | Sbjct 65079 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAAGTG 65020 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || || || ||| || | || || | || || || ||||| Sbjct 65019 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 64960 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || ||||| || ||||| || || | ||||| | ||| ||||| |||||| || Sbjct 64959 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 64900 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 ||||| ||||| ||| || |||||| | || ||||||||||| ||||| || Sbjct 64899 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCG----TG 64844 Query 118077 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 | | |||| | | |||||| || || ||| || || || || || ||| Sbjct 64843 AGCGATGATTCGGTTCTTCATTGTGTCGTT---CCAAAGTCC---CTGTTCGACCAACTC 64790 Query 118130 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 118185 ||| | ||||| || || ||||| || || || | ||| |||| Sbjct 64789 GCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAGA 64731 Query 118186 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 118245 | |||| ||||| ||||| |||||||| ||| |||||||| || || || || | Sbjct 64730 TGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 64671 Query 118246 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 118305 ||||||||||||||| | ||| |||||| ||||| | | ||| |||||| Sbjct 64670 TGGGCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGA 64611 Query 118306 G---AGC---GTCCCAG---TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACT 118356 | ||| ||||||| ||| || ||| || | |||| |||| || ||| Sbjct 64610 GCGAAGCCCAGTCCCAGAGGTCGGAGG-GAG---TGACACCCC-----ACATGTCGTACT 64560 Query 118357 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 | || || ||||| || ||||| || | ||||||| || | ||| | ||| | Sbjct 64559 GAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAG 64500 Query 118417 CCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 |||| ||| | | |||| ||||| || ||||| || || || || || || | | ||| Sbjct 64499 CCAACTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTC 64441 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAG 118534 | ||||| ||| || || || | | || | || ||| |||| ||||| Sbjct 64440 AAACGACGCGCCTCAGGGGACTCGAAGGC-ATACCCCATGATCATGAATGCATCGGCGAG 64382 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCAC 118594 ||| || ||||||| || || || || || | ||| || || ||||| || || Sbjct 64381 ACCCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAAC 64322 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||| ||| | || | ||||| | | | || | || ||| || | || | || || Sbjct 64321 GGGGTAATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTC 64262 Query 118655 ATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 ||| || | |||| | || | || | | || | | || ||||||| Sbjct 64261 ATGCAGACGCTTAAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGA 64203 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || |||| || || |||| | |||||| ||| |||||| || ||||| |||| Sbjct 64202 TGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGC 64143 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 | | ||| || | ||| ||||| || | |||||| || || ||||| |||| || | Sbjct 64142 AGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGT 64083 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 ||||||| || ||| | || | || ||||| || || |||| ||| || || | ||||| Sbjct 64082 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 64023 Query 118894 CATCGGCAGCTGGCACAGTGGCG-TTGGCT-----CGCCCCTCTTCCTCGTACTTTGTGT 118947 || |||| | || || || ||| || ||||| ||||||| || Sbjct 64022 -----GCTTCTGGGCCT-TGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGT 63969 Query 118948 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 119007 |||| |||||||| ||||| | || | || || || || | ||||| | Sbjct 63968 AGAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACA 63909 Query 119008 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067 ||| ||||| | ||| || ||| |||| |||||||||||| || |||| ||| || | Sbjct 63908 TGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAG 63849 Query 119068 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | ||||||| || || ||| |||| || | || || || ||||| || | | Sbjct 63848 CGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGA 63789 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG-- 119185 | || | || ||||| |||||| || || | ||| | || | | || | |||| Sbjct 63788 ACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCT 63732 Query 119186 ----ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 |||| | |||| || || | |||||| ||| || ||||| ||||| || | || Sbjct 63731 TGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGA 63672 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 |||| | | || || || || ||| ||| | | | | |||| Sbjct 63671 TACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATGGA 63612 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 ||| | ||| ||||| || || ||| ||||| || || | |||| || ||| Sbjct 63611 TGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGT 63552 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 ||||||| |||||||||||| |||| | | || ||||| || ||| | ||||| Sbjct 63551 AGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGT 63492 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATC 119480 ||| ||||| ||||||||||| ||||| | || | || || ||| ||| ||||| Sbjct 63491 GGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATG 63433 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||| ||||| | | |||||| | ||||||||||||| | || ||| Sbjct 63432 AGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGC 63373 Query 119541 ATAAACATGTATTGGGG 119557 || | ||||| ||||| Sbjct 63372 ATGATCATGTGCTGGGG 63356 >seq580 Length=301176 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||||||||| |||||||| || || |||||| ||||| Sbjct 40680 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 40739 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| |||| ||| ||||| ||||||||||| Sbjct 40740 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 40799 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || || || || |||| |||||||||||| |||| Sbjct 40800 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 40840 >seq550 Length=300240 Score = 131 bits (144), Expect = 2e-25 Identities = 260/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| ||||| || |||||| || || | |||| |||||||||||| ||||| || Sbjct 95042 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 95101 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || || || | || | Sbjct 95102 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAACT-GCTGACGT 95160 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | | || | ||| || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 95161 CAAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 95220 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| || | | || || |||||||| | ||| ||||| || |||| Sbjct 95221 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 95280 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | |||||||| | |||||||| ||| | |||||||| || || || | ||| |||| Sbjct 95281 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 95340 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCTTGTTC 180090 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 95341 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 95399 Query 180091 GCGTCGTCCAACTTGGGAAT 180110 || || || | ||||||||| Sbjct 95400 GCATCTTCAAGCTTGGGAAT 95419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429688196280