Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq555 327 1e-84 seq580 140 4e-28 seq550 136 5e-27 seq518 89.7 6e-13 >seq555 Length=342432 Score = 327 bits (362), Expect = 1e-84 Identities = 1138/1748 (65%), Gaps = 51/1748 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||||||||| || | |||||||| || Sbjct 63356 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCT 63415 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | ||| || | ||||| ||||| Sbjct 63416 ATTGAGACGTACAACCTCATGTCGCAAAAGTACTTT-ACTCATGCCTCGCCAACGCTCTT 63474 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || || |||||| || ||| ||||| || Sbjct 63475 CAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGA 63534 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| || || Sbjct 63535 CTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 63594 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | |||||||| | | | | ||| ||| || || || Sbjct 63595 TGGTATCGGTCTCAACATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAA 63654 Query 104521 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||| |||| | ||||| | || ||||| || || || ||| ||| || || || Sbjct 63655 CGGTG--TCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTAC 63712 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| || | | || |||| ||||||| ||| Sbjct 63713 GTCGACCAAGGTGGTAACAAGCGTCCT---GGTGCCTTTGCTATCTACATTGAGCCTTGG 63769 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||| ||||| || | |||||||| || ||||| ||||| ||| | ||||| | || Sbjct 63770 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGT 63829 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| || ||||||| |||||| ||| | || ||||||||||||||||| || ||| || Sbjct 63830 GCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAG 63889 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | |||| ||||||| ||| | || || || || || || || |||| | ||| Sbjct 63890 AATGGCGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGGT 63949 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA-CGGT 104871 || |||||||| || ||| ||||||| || || || | |||| | || Sbjct 63950 GACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGGACGCTGTAA-GCGAACCGT 64008 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | | ||| | || || ||| ||||||| |||||||| |||| || | Sbjct 64009 -CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTT 64067 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||| || ||||| ||||| ||||| ||| || || ||||| | ||| |||| Sbjct 64068 TCATCCTCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCA 64127 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || | ||||| ||||| || |||||| | || | | | | |||||| ||||| | Sbjct 64128 AGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCT 64187 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | ||| | || || ||||| ||||||| | | || || | || ||| | |||| Sbjct 64188 GCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACGATT 64247 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | || || || || | ||| | || ||| ||| | |||| | || || | Sbjct 64248 TTAAGCGTCTGCATGAGGTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCATCGACA 64307 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 || | |||||||||||| |||||| ||| || ||| | |||||||| || ||| Sbjct 64308 TCAACTATTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCATCGGTA 64367 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGA 105288 ||||||||||||||||||| |||| |||||| || | | | | || || || ||| Sbjct 64368 TCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGG--GGTATGCCTTCGAGTCCCC 64425 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 || ||| | || | || || || |||||||| || ||||||||||| || || Sbjct 64426 TGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA-GC 64484 Query 105349 GA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || || | |||||||| ||| | || | || || || | | ||||| || ||| Sbjct 64485 GATCGTGC-GAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCCCGCT 64543 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTG 105465 || || || | ||||| | || ||||||| || | || | | || ||||| Sbjct 64544 TCCCAGGGAGAACTTCAGTACGACATGTGGG-GTGTCACTCCCTCCGACCTCTGGGACTG 64602 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 || | ||||||| |||| || | |||||||||||| || | |||| || Sbjct 64603 GGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTTCGTAACTCACTTTTGTTGGCACC 64662 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || || || ||| || |||||||| || || ||||| || |||||||| Sbjct 64663 CATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCCCTACAC 64722 Query 105586 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGC 105641 | |||||||| ||| | | || || || || || | | ||||| | | Sbjct 64723 TTCCAACATCTACTCT-CGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACCCCTGGT 64781 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCA 105698 ||| || || || || || || ||| | | |||||| | | ||| Sbjct 64782 TGCTCCGCGAGTTGGTCGAACAG---GGACTTTGGAACGACACAATGAAGAACCGAATCA 64838 Query 105699 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGT 105758 | | | ||||| ||||| ||||| | | ||| || | || |||||| Sbjct 64839 TCGCTCA---CGGTGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGAAGC 64895 Query 105759 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 105818 | ||| || || ||||| ||| | ||||| |||| ||||||||||| ||||| | Sbjct 64896 TCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATCGAG 64955 Query 105819 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGAT--G 105874 || |||||| | |||| ||| | ||| || | || ||| ||| | | Sbjct 64956 GTGCTTTCATT--TGCCAGTCGCAGTCGCTCAATATCCACCTGTCCGCTCCTACGTTCGG 65013 Query 105875 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 || ||||| |||| |||||| | ||| | ||||||||||||||||| ||||| | || Sbjct 65014 TC--AGCTCACTTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGGGTACCTAC 65071 Query 105935 TACCTCCG 105942 |||||||| Sbjct 65072 TACCTCCG 65079 >seq580 Length=301176 Score = 140 bits (154), Expect = 4e-28 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| |||||||| ||| | || ||||| || || |||||||||||||| || |||| Sbjct 40840 CCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCT 40781 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | | | || | |||||||||||||| ||||||||||| |||||| |||||| |||| Sbjct 40780 TTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACG 40721 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||||||||||||||| || ||| || ||||| Sbjct 40720 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGC 40681 >seq550 Length=300240 Score = 136 bits (150), Expect = 5e-27 Identities = 241/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 95076 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCGGTCATGATCATGATA 95135 Query 169220 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 169278 | || || || || || | || || | || | ||| || || || ||||| | ||| Sbjct 95136 CTGCCGTATCGCAAACT-GCTGACGTCAAGGTACTGCTTGCCGTGCTGCAGACCGATGAT 95194 Query 169279 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAAC 169338 || ||||| | |||| ||| || ||| ||| | || || || || || Sbjct 95195 CTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTCGCTTCACGGAC 95254 Query 169339 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 ||| | ||| |||||||| ||||| |||||||| | |||||||| || || || Sbjct 95255 ATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCCACCTCGACAAG 95314 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT--TT 169456 ||| || || || || | ||| || |||||||| ||||||| |||||| || || | || Sbjct 95315 ACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGAGTGCAGTCCTT 95374 Query 169457 CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 169503 | |||| ||| || ||||| ||||| || | |||||||| Sbjct 95375 GGCTTTCCTGCC--ACCAGCGTTGTTGGCATCTTCAAGCTTGGGAAT 95419 >seq518 Length=347958 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTCAAAG 9760 ||||| |||||||||||||||| |||||| || || || | | ||| |||| Sbjct 178406 GCATCGATCTCATCAATGAAGATGATGCAAGGAGCGTGCTTCTTG---GCGTTGGCAAAC 178350 Query 9761 AGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | || || ||||| ||||| || ||||| ||||||||||| ||||| | | | || Sbjct 178349 ATGTCTCGGACACGGCTTGGA-CCGACACCGACAAACATCTCTACAAACTCGGACCCAGA 178291 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 | | ||| || ||| || ||||| ||| | || ||| || | |||||||| Sbjct 178290 AACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCTTACC 178231 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| || ||| | ||| | |||||| || |||||||||||||| Sbjct 178230 GGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCC 178183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255601688120