Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq578 183 9e-41 seq650 104 7e-17 >seq578 Length=360407 Score = 183 bits (202), Expect = 9e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| |||||||| || |||||||| ||||| || ||||| Sbjct 207313 CATACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATC 207254 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||| ||||| ||||| ||||||||||| Sbjct 207253 CGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGG 207194 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||||||| || ||||| || || || || ||||| ||||| | || || || || Sbjct 207193 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTC 207134 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 207133 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 150 bits (166), Expect = 5e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || |||||||| | ||| ||||| || || || || || || || Sbjct 207538 ACCGCCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 207479 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||||||||| || || || |||||||| ||||| ||||||||||| || Sbjct 207478 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGG 207419 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || |||||||| || || || || || ||||| | ||||| | || || Sbjct 207418 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGAC 207359 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| | || || ||||| |||||||| Sbjct 207358 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 Score = 150 bits (166), Expect = 5e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| |||||||| || || || || || || || Sbjct 306156 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 306215 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || ||||||||||| ||||| ||||||||||| || Sbjct 306216 AAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGG 306275 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| || ||||| || || || || || || || || | || || | || || Sbjct 306276 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 306335 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 306336 CTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 306383 >seq650 Length=146785 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| ||||| || ||||| || || || || || || Sbjct 130904 ATACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCC 130963 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 130964 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGG 131023 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || || || || || || || | || || | || Sbjct 131024 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCC 131083 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| || | ||||| || ||| Sbjct 131084 ACCTCAAGGGTGATGGTCTTACCTGTT 131110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515240557677539