Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq555 327 1e-84 seq550 95.1 1e-14 >seq555 Length=342432 Score = 327 bits (362), Expect = 1e-84 Identities = 535/763 (70%), Gaps = 6/763 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | ||||| ||||| | ||| | ||| |||||||||| Sbjct 63369 TCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCTATTGAGACGTACA 63428 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| || ||| ||||||| || |||||||| ||||| Sbjct 63429 ACCTCATGTCGCAAAAGTACTTTACTCATGCCTCGCCAACGCTCTTCAACGCCGGTACCC 63488 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||||||| | ||| || ||||| || | ||||||||||||||||||||||| | Sbjct 63489 CCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTCGATCGACGGGA 63548 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||||||| | |||||||||||| || Sbjct 63549 TCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCA 63608 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | | |||| | |||| | || || || ||||| ||| | | | Sbjct 63609 ACATCCATTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGGTGTCAGCAACG 63668 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| |||||||| |||||||||||||| || || |||||| |||| |||||| Sbjct 63669 GTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGACCAAGGTGGTA 63728 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || || |||||| | ||||| |||||| | || | | |||| Sbjct 63729 ACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAGT 63788 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| |||| ||| || ||| | || || | || |||||| || || ||| Sbjct 63789 TCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGAGCTCTTCTAC- 63847 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| ||| | || || ||||||||| | | ||| ||| || | | || |||| || Sbjct 63848 GCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGATTGGTCGCTC 63907 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||||| | | | || ||||||||| |||||| | | Sbjct 63908 ATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTG-CTACGGTGACGAGTTTGAGCGTCT 63966 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | | |||| |||| ||| | |||||||| | || | | Sbjct 63967 CTA-CGAGCGCTACGAGGCTGAGGGACGCTGTAAGCGAACCGTCAAGGCCCAGAAGCTCT 64025 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | ||| ||||||||| Sbjct 64026 GGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCCTCTACAAGGACG 64085 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | ||| ||| ||||||||||||| |||| |||||| Sbjct 64086 CTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAA 64128 Score = 140 bits (154), Expect = 4e-28 Identities = 534/814 (66%), Gaps = 42/814 (5%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||| ||||| | ||||||||| || || ||||| ||||| || || ||||| Sbjct 64285 GAACTTGAACAAGATCATCGACATCAACTATTACCCCGTTGAAGAAGCTCGTCGATCCAA 64344 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||||| |||||||| ||||| | ||||| |||||||| | Sbjct 64345 CATGCGTCACCGTCCCATCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCAT 64404 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCT-CGAGAAATT--AACCAGGACATCTTC-AGTC 55313 || | ||||||| || |||| || | || ||| | | |||||| || | Sbjct 64405 GGGGTATGCCTTCGAGTCC---CCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGAC 64461 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTAC 55372 ||||||| || || |||||| ||||| | ||||| | |||| | || |||||| Sbjct 64462 -CATCTACCACGCCGCTCTCGAGCGATCGTGCGAGTTGGCTCAGGAGC-ACGGCACCTAC 64519 Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG---C 55429 ||||| | || | |||||| ||| | ||||| || |||| ||| | ||||| | Sbjct 64520 GAGACATACCAAGGTTCGCCCGCTTCCCAGGGAGAACTTCAGTACGACATGTGGGGTGTC 64579 Query 55430 AAG---TCTGACCCCATGT--TTGACAA-GTTGAAGCATGACATTCACTTGTGGGGCCTA 55483 | || |||| | | | | | | | ||| | |||| | | || || Sbjct 64580 ACTCCCTCCGACCTCTGGGACTGGGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTT 64639 Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| || | |||| || ||||| || || ||||| ||||||| ||||| | Sbjct 64640 CGTAACTCACTTTTGTTGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTC 64699 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||| || || || || ||||| Sbjct 64700 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACTCTCGTCGTGTACTTGCTGGTGAA 64759 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATC-AACAAG-----TGG 55657 || || | || ||| | ||| || | || || | || |||| | ||| Sbjct 64760 TTC--CAGG-TCGTCAACC-CCTGGTT--GCTCCGCGAGTTGGTCGAACAGGGACTTTGG 64813 Query 55658 AACC-CGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG-- 55711 ||| | || || |||| || || || | | |||| || ||| |||| || | Sbjct 64814 AACGACACA-ATGAAGAACCGAATCATCGCTC---ACGGTGGCTCCATCCAAAACGTCCC 64869 Query 55712 -GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | || || ||| ||||| || | ||| ||| || |||||||| | |||||| Sbjct 64870 CGGTATCCCCGACCGTATCAAGAAGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAGGC 64929 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | || |||||| || ||||| ||||| | ||| |||||| ||||| || || || Sbjct 64930 CATCATCGACATGGCCGCCGATCGAGGTGCTTTCATTTGCCAGTCGCAGTCGCTCAATAT 64989 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 | | || |||| | | | || | | ||||||||||||||||| |||||||| Sbjct 64990 CCACCTGTCCGCTCCTACGTTCGGTCAGCTCACTTCGATGCACTTTTACGGCTGGAAGAA 65049 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||| ||||||||||||| ||||| || || ||| Sbjct 65050 GGGTCTCAAGACGGGTACCTACTACCTCCGTACC 65083 >seq550 Length=300240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGC-TCCTCGTCGT 119141 |||||| |||||||||||||| ||||| | ||||||||| || | || || || |||| Sbjct 96266 GTTGGCGAGCTTGGCACCGTAACCGTTTCTACCACCGGTGAC-CTTGGCTTCGTCATCGT 96324 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||| |||||| || | ||||| |||||||||||||||||||| Sbjct 96325 TGTAATTGGAGGAAGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 96370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211122937400