Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq555 257 2e-63 seq578 188 8e-43 seq650 154 2e-32 seq580 123 3e-23 seq550 82.4 9e-11 >seq555 Length=342432 Score = 257 bits (284), Expect = 2e-63 Identities = 1127/1751 (64%), Gaps = 63/1751 (4%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||| | ||||||||||| ||||||||||||||||| | |||||| ||| Sbjct 65082 GTACGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAAAAGTGCATCGAA 65023 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| | | || || || | ||| || || ||||| ||||| || ||| Sbjct 65022 GTGAGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATG 64963 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 ||||| || ||||| || ||||| || || || | ||| || | || ||||| || || Sbjct 64962 AAAGCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTC 64903 Query 80218 CGATACACCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCACCGTCC 80274 || | ||| | || || || | | ||||| | |||||||| Sbjct 64902 TTGTAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCCACCGTGA 64843 Query 80275 TTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA- 80332 | ||| | || |||| || | ||| ||| | || | | | || || | Sbjct 64842 GCGATGATTCGGTTCTTCA-TTGTGTCGTTCCAAAGTCCCTGTTCGACCAACTCGCGGAG 64784 Query 80333 CAAG--GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGT 80389 ||| | | ||| | | || | || || || || ||||| ||| || | || Sbjct 64783 CAACCAGGGGTTGACGACCTGGA---ATTCACCAGCAAGTACACGACG-AGAGTAGATGT 64728 Query 80390 TTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCG 80449 | | |||||| ||||| || ||||||| || | ||||||| || || || | Sbjct 64727 TGGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGG 64668 Query 80450 GCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCA 80506 |||| || | | ||| ||||| || || || |||||||| ||| | ||| | || Sbjct 64667 GCATGGGTGCCAACAAAAGTGAGTTACGAAGACCGTGCTTGGCGATGTTAGCCTTGAGCG 64608 Query 80507 AATCTGA---CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAAGAT 80561 || | | ||| | || | | ||||| |||||||||||| ||| ||| | Sbjct 64607 AAGCCCAGTCCCAGAGGTCGG-----AGGGAGTGACACCCCACATGTCGTACTG-AAGTT 64554 Query 80562 G-CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT 80620 |||| || || || || || | | |||||||| | ||| | | || |||| || Sbjct 64553 CTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCAACT 64494 Query 80621 CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 | ||||| | || || ||||| || ||| ||| |||| | ||||| || | Sbjct 64493 CGCACGATCGCTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGAC 64434 Query 80681 GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 |||||| ||| ||||| | | ||||| |||||||| | || || || ||||||| Sbjct 64433 GCGCCTCAGGGGACTCGAAGGCATACCCCATGATCATGAATGCATCGGCGAGACCCTGAA 64374 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAA 80800 | ||||| |||| || ||||| ||| |||| ||||| || || || |||||| Sbjct 64373 CACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAAT 64314 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA-ACATCATGAAGT 80859 |||| | ||||||| ||||| ||| | || | | || || ||||| || Sbjct 64313 AGTTGATGTCGATGATCTTGTTCAAGTT-CTTGCAGATGGCTTTGGCGACCTCATGCAGA 64255 Query 80860 TTCTGAAAGTCGAA----TTGGTTCCCCT-TC-ACAAATGCCGGAAGGCTCAGGGACGCC 80913 || ||| ||| | ||||| | || | || | || ||| | ||| ||| Sbjct 64254 CGCTTAAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGAGGCC 64195 Query 80914 AGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTA 80973 | ||||| || || ||||| || | | | |||||| |||||| ||||| | || Sbjct 64194 AAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTG 64135 Query 80974 GAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAG 81033 || |||| || ||||| ||||| |||||||| |||||| ||| ||||||||||||| Sbjct 64134 GAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTCCTTGTAG 64075 Query 81034 CACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGC 81093 ||| | || ||||||||||| ||| |||| ||||||||||| ||| | || | Sbjct 64074 AGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGG 64015 Query 81094 GCCTTGAC---CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTC 81149 |||||||| ||| | | | || || ||| | || |||| || | || Sbjct 64014 GCCTTGACGGTTCGCTTACAGCGT---CCCTCAGCCTCGTAGCGCTCGTAGAGACGC-TC 63959 Query 81150 GAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCC 81208 |||| | |||||| | || || | ||| | ||||||||||| |||||||| || || Sbjct 63958 AAACTCGTCACCGTAGCAG-TCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACC 63900 Query 81209 AGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACA 81268 | ||| | | ||| || ||||||||| || |||| ||| || ||| ||| | Sbjct 63899 AATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGA 63840 Query 81269 GGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGA 81328 | || ||| || | ||||| | ||| ||||| |||||| ||||| || || | || Sbjct 63839 GCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 63780 Query 81329 TGTCCGCATGCCATGGCTC----CAGATA--CACGGCGATCGACCCCTTGCGACGGCCAC 81382 |||| ||||| ||||| ||||| | ||| | | |||| | |||| Sbjct 63779 CATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTA---CCAC 63723 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT--C 81440 | |||| ||||||||| ||||| ||| || ||||| | ||| || | |||||| | | Sbjct 63722 CTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGC 63663 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAA 81498 |||| |||||| ||||| | || || || | | || | | || ||| Sbjct 63662 TGAC--ACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAATG--GATGTTG 63607 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 |||||||| ||||| | ||| || ||| ||||| || | ||| || || || Sbjct 63606 AGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATC 63547 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 || ||||| || | |||||| | | |||||| || | ||||||| Sbjct 63546 CCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGG 63487 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | ||||| ||||| || ||||| | || ||| | || || | ||||| |||| Sbjct 63486 GTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTG 63427 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 || || || | | | ||| || | ||||||||||||| ||| |||||||| | | Sbjct 63426 TACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATC 63367 Query 81739 ATGTACTGGGG 81749 |||| |||||| Sbjct 63366 ATGTGCTGGGG 63356 >seq578 Length=360407 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || ||||||||||| ||||| | Sbjct 207311 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 207370 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 207371 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 207430 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 207431 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 207490 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||||| ||| | |||||||| || || Sbjct 207491 ATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGTCTTCGTGGCGG 207537 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||| ||| | Sbjct 207083 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 207142 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| ||||||||||| || ||| Sbjct 207143 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 207202 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| |||||||| | || || || Sbjct 207203 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 207262 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||||| |||||||| || | || || || ||||| Sbjct 207263 ATTCAGAAAGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGG 207309 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || || ||||| ||||| Sbjct 306383 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCTTCG 306324 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| |||||||| || || ||| Sbjct 306323 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAG 306264 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| ||||| |||| ||| ||||| | ||||| || Sbjct 306263 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTCGGACTACAAC 306204 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | || ||||| ||||| Sbjct 306203 ATCCAGAAGGAGTCTACCCTTCACCTCGTCCTCCGCCTTCGTGGTGG 306157 >seq650 Length=146785 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| || | ||| | || | ||||| Sbjct 131109 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 131050 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || |||||||||||||| || |||||||||||| Sbjct 131049 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAG 130990 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| ||||| ||||| Sbjct 130989 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCAC 130930 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 130929 CTTGTCCTCCGTCTCCGTGGTGG 130907 >seq580 Length=301176 Score = 123 bits (136), Expect = 3e-23 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 ||||| | |||| || | || ||||| ||||||||| | || ||||| || || Sbjct 40907 GAGACCATCCCCGTCGTCAAGAAGAAGGCCGAATGGGCCCTTCGATGGATCAACGACCGC 40848 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 | | | || | | ||||||||| || |||||| || ||||| || ||||| || Sbjct 40847 AAGGCCACCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCA 40788 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || || || || || |||||||| || ||||| || || ||||| ||||| | || Sbjct 40787 GGCTCCTTTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTC 40728 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTC 64878 || |||||||| |||||||| |||||||| || ||| || ||||| ||| ||| Sbjct 40727 TCTAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTTC 40668 Query 64879 AGCCACCTCAAG 64890 |||||||||||| Sbjct 40667 AGCCACCTCAAG 40656 >seq550 Length=300240 Score = 82.4 bits (90), Expect = 9e-11 Identities = 232/345 (67%), Gaps = 20/345 (6%) Strand=Plus/Minus Query 31204 ATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTT 31263 ||||| ||||| || || |||||| || ||| | || | | || ||||| || Sbjct 95419 ATTCCCAAGCTTGAAGATGCCAACAACGCTGGTGGCAGGAAAGCCAAGGACTGCACTCTC 95360 Query 31264 ATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGG-CTTGAGTGTTGTGGG 31322 || | ||||| |||||||| || |||||||||||| | ||||| |||| | ||||| Sbjct 95359 ATCCTCACCGAAGGTGACTCCGCCAAGGCGCTTGCTGTGGCTGGTCTTG-TCGAGGTGGG 95301 Query 31323 GCG---CAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGA--C 31377 || |||| | ||| || || ||||| || || |||| | || || ||||| | Sbjct 95300 TCGTGACAAT---TACGGTGTTTTCCCGCTTCGTGGTAAGCTTCTCAATGTCCGTGAAGC 95244 Query 31378 GCCTC-CGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACC--TGAAAAAGATCCTC 31434 | ||| || | ||| | | | | |||| ||| || || | | || ||||| || Sbjct 95243 GACTCACG---ATCAGATCATGAAGAATGCCGAG--ATCAAAGCGATCAAGGAGATCATC 95189 Query 31435 GGGCTTCAGCATGGCAAGGTATATAATTCAC-TGAGAGAATTGCGGTACGGTCGCCTCAT 31493 || || ||||| |||||| || || || | || ||||| ||||| | |||| Sbjct 95188 GGTCTGCAGCACGGCAAGCAGTA-CCTTGACGTCAGCAGTTTGCGATACGGCAGTATCAT 95130 Query 31494 GATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 ||| |||||||| |||| ||| || |||||||||||||| Sbjct 95129 GATCATGACCGATCAGGATCACGATGGTTCGCACATCAAGGGTCT 95085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305317108560