Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq624 141 8e-29 >seq624 Length=65696 Score = 141 bits (156), Expect = 8e-29 Identities = 430/664 (65%), Gaps = 34/664 (5%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 ||||| | || |||| ||||| || || | ||||||||| |||| || || || Sbjct 39812 TTTATGTTGAGCTTGGGGAAGGGCAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCT 39871 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 |||| ||| |||||||||||||||||||| | || | || || || Sbjct 39872 ACGTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAA 39931 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 ||||||| | ||| ||||| || ||||| | || ||||||||| ||||| ||||| || Sbjct 39932 TCGGTGACTTTAGCGATCATATAAGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACT 39991 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT--------CTCCGT 30056 || | ||| | || | || | ||||| | ||||| ||||||| | ||| Sbjct 39992 CCCAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCGA 40051 Query 30057 CGCTCA-CGTAA---------------------AACTGACACATGGCGTGGCACGGAGGA 30094 | || ||||| ||||| || | |||||| ||||| Sbjct 40052 CCCTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGG 40111 Query 30095 AGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCT 30154 ||||||||||| | | |||||||||||||| || | | | ||| | | || Sbjct 40112 AGAGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGATCCTGCGATCGGTG 40171 Query 30155 GGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 30214 ||||||||| |||| ||| | | | | ||| || || || || || | |||| Sbjct 40172 GGGTTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAG 40231 Query 30215 TCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || | | || |||| |||| ||||| || || || | ||| ||||| ||||| || || Sbjct 40232 TCGGTGTCGCA-GTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGG 40290 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||| || || ||| || ||| | ||| | | | ||| | || |||| || || Sbjct 40291 ACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGCGAGTCGAGGAACTCTCGTGATCC 40350 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||| |||||||||| | || ||||| |||| || ||||||| || || Sbjct 40351 GTTACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGC 40410 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA-AAGACCCTCTTGGTCGTGAGGA 30452 || ||||| || |||||||||| || |||| ||| ||||| | ||| || ||||| | Sbjct 40411 CACAAACCAGAGGAGCTCCTCCAGTAC-GCCTCGCAAGAAGACACGCTTTGTGGTGAGCA 40469 Query 30453 GGGG 30456 | || Sbjct 40470 GAGG 40473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306869289596