Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq578 131 1e-25 >seq578 Length=360407 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || |||||||| || || | || Sbjct 207311 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 207370 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || || || || || ||||| Sbjct 207371 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 207430 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | ||||| | ||| | ||||| |||||| Sbjct 207431 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 207490 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || ||| | || | ||| | || || || Sbjct 207491 ATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGTCTTCGTGGCGG 207537 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || || || || || Sbjct 207083 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 207142 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| ||||| || || || ||||| Sbjct 207143 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 207202 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | ||| | || ||||||||| Sbjct 207203 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 207262 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | ||| | ||| | || | || ||||| || Sbjct 207263 ATTCAGAAAGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGGTAT 207312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914523789760