Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq624 181 9e-41 >seq624 Length=65696 Score = 181 bits (200), Expect = 9e-41 Identities = 464/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 6449 AAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGG 6508 ||||||||| | | ||||||||||| ||||| | || | || ||||||| |||| Sbjct 39770 AAGTCCTCGTACTTGAAGTCATCGATATCGGTGATATCGCGCTTTATGTTGAGCTTGGGG 39829 Query 6509 AACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATA 6568 || || || || || | ||||||||| ||| |||| | ||| | ||||| Sbjct 39830 AAGGGCAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCTACGTGATCTTTGTAGACG 39889 Query 6569 TGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATC 6628 || || || |||| || | |||| || ||| || | | | ||| | ||||||| Sbjct 39890 TGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATCGGTGACTTTAGCGATC 39949 Query 6629 ATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCC 6688 || || ||||||| |||||| || ||||||||||| || || || ||||| | || | Sbjct 39950 ATATAAGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCCCAACCCGAGATCGCAG 40009 Query 6689 GATCGTTGATAGAGCTGGCAGGACAGCT--------CCCC-------------------- 6720 || ||||| || | || || || |||| |||| Sbjct 40010 GAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCGACCCTTTGCGTAAGCGTCG 40069 Query 6721 --ATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGA 6778 || | |||| |||| ||||||| ||||||| || ||||| ||||| |||| ||| Sbjct 40070 AGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAGCAAGA 40129 Query 6779 TCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTG 6838 || || |||||||| || | | || |||||| | || ||||| ||| | || Sbjct 40130 TCTTTGGGGTTCCATGCACTGAGCAAGATCCTGCGATCGGTGGGGTTGTTCTTGATCTTG 40189 Query 6839 TCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA 6898 || || || | ||| ||||| | || || || | ||||| | |||| || Sbjct 40190 TCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAGTCCTTG 40249 Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||| ||| ||||| |||||||| || ||||| || || || | Sbjct 40250 TATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACCTTCTCGC 40309 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | || | ||| ||| || || ||||| || |||| | |||||||||| | | Sbjct 40310 CGGTGTTGCAAGTCACGCGAGTCGAGGAACTCTCGTGATCCGTTACCGTCCCAGATGTGC 40369 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 || ||| | | || ||||| || || || ||| ||||| || |||||| Sbjct 40370 ACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCC 40429 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131 || | ||||| | || | ||||| || || || ||||| || | ||||| Sbjct 40430 TCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCAGAGGCAGATCGCC 40482 Score = 181 bits (200), Expect = 9e-41 Identities = 464/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Minus Query 34214 GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTG 34273 ||||| | || ||||| || || || ||||| | || | ||||| | |||||||| Sbjct 40482 GGCGATCTGCCTCTGCTCACCACAAAGCGTGTCTTCTTGCGAGGCGTACTGGAGGAGCTC 40423 Query 34274 CTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATC 34333 || ||||| ||| || || || ||||| || | | ||| ||| | ||| Sbjct 40422 CTCTGGTTTGTGGCTGGCAAGACCGACTCCAAGCTTCTTACTGACAAGGGCGTGCACATC 40363 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||||| | |||| || ||||| || || ||| ||| | || | | ||| || Sbjct 40362 TGGGACGGTAACGGATCACGAGAGTTCCTCGACTCGCGTGACTTGCAACACCGGCGAGAA 40303 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || || ||||| || |||||||| ||||| ||| |||||||||| || || || || Sbjct 40302 GGTGATTTGGGTCCAGTCTACGGCTTCCAATGGCGACACTTTGGCGCAGAATACAAGGAC 40243 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 |||| | ||||| | || || || | ||||| ||| | || || |||| | Sbjct 40242 TGCGACACCGACTACACCGGTCAAGGCGTTGACCAATTGCGTGAAGTCATTGACAAGATC 40183 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||||| || | |||||| || | | || |||||||| || ||||| || Sbjct 40182 AAGAACAACCCCACCGATCGCAGGATCTTGCTCAGTGCATGGAACCCCAAAGATCTTGCT 40123 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT--------- 34624 || ||||| ||||| || ||||||| ||||||| |||| |||| | || Sbjct 40122 CTCATGGCTCTCCCTCCTTGCCACATGTTCTGCCAGTTCTTCGTCTCCAACCTCGACGCT 40063 Query 34625 -------------GGGG--------AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 |||| |||| || || || | || ||||| || | || Sbjct 40062 TACGCAAAGGGTCGGGGCAAGAAGCAGCTCTCTTGTCAAATGTACCAACGTTCCTGCGAT 40003 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 | ||||| || || || ||||||||||| || |||||| ||||||| || ||||||||| Sbjct 40002 CTCGGGTTGGGAGTCCCCTTCAACATTGCCAGCTACGCTTTGCTCACTTATATGATCGCT 39943 Query 34724 CATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 | ||| | | | || ||| || |||| | || |||| || || || ||||| Sbjct 39942 AAAGTCACCGATTGCGAGCCCAAGGAACTCGTGCTTTCGATGGGAGACGCTCACGTCTAC 39883 Query 34784 CTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | ||| | |||| ||| ||||||||| | || || || || |||||| || Sbjct 39882 AAAGATCACGTAGAGCCACTCAAGATCCAGCTCGAGCGTGAACCATTGCCCTTCCCCAAG 39823 Query 34844 CTCAAAATTATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTT 34896 ||||| || | || | ||||| ||||||||||| | | ||||||||| Sbjct 39822 CTCAACATAAAGCGCGATATCACCGATATCGATGACTTCAAGTACGAGGACTT 39770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258404861360